Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA90_RS12415 Genome accession   NZ_CP095096
Coordinates   2525350..2526720 (-) Length   456 a.a.
NCBI ID   WP_232166811.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2520350..2531720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS12400 (MUA90_12405) cysE 2521582..2522211 (-) 630 WP_199790696.1 serine O-acetyltransferase -
  MUA90_RS12405 (MUA90_12410) gltX 2522512..2523966 (-) 1455 WP_262587245.1 glutamate--tRNA ligase -
  MUA90_RS12410 (MUA90_12415) - 2524256..2525320 (-) 1065 WP_262587247.1 PIN/TRAM domain-containing protein -
  MUA90_RS12415 (MUA90_12420) radA 2525350..2526720 (-) 1371 WP_232166811.1 DNA repair protein RadA Machinery gene
  MUA90_RS12420 (MUA90_12425) - 2527011..2529476 (-) 2466 WP_262587249.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA90_RS12425 (MUA90_12430) - 2529488..2530495 (-) 1008 WP_105994735.1 protein arginine kinase -
  MUA90_RS12430 (MUA90_12435) - 2530499..2530903 (-) 405 Protein_2416 UvrB/UvrC motif-containing protein -
  MUA90_RS12435 (MUA90_12440) - 2531038..2531499 (-) 462 WP_114603976.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50160.66 Da        Isoelectric Point: 7.4600

>NTDB_id=675389 MUA90_RS12415 WP_232166811.1 2525350..2526720(-) (radA) [Staphylococcus sp. IVB6181]
MAKKKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVISQKEAPSGRGMRTREQTAKVTKLNQVQHETTPRIHTSSPEFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKVLYITGEESLNQTKLRADRLEEDSSQLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTVYHPDISSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYVKVAGGVRLTEPAVDLAIIAAVASSFKDQPVNGMDCFVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPDNIQVIGVTSVHEALNFALMKS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=675389 MUA90_RS12415 WP_232166811.1 2525350..2526720(-) (radA) [Staphylococcus sp. IVB6181]
TTGGCGAAAAAGAAAGTGACATTCGAGTGTATGGCTTGTGGTTACCAATCACCGAAATGGATGGGGAAATGCCCGAATTG
CGGAGCTTGGAACCAAATGGAAGAGGTAATCTCTCAAAAAGAAGCACCCAGCGGCAGAGGGATGCGTACACGCGAACAAA
CAGCTAAAGTAACAAAATTAAATCAAGTGCAGCATGAAACGACACCGCGTATCCACACGAGCTCGCCTGAATTTGATCGT
GTCTTGGGCGGAGGCATTGTACAAGGTTCGCTGGTGCTTATCGGCGGCGACCCGGGTATCGGGAAATCTACATTGCTGCT
GCAGATTTGTTCTGCATTATCTCAAAATAAGAAAGTATTATATATTACCGGTGAGGAATCACTGAACCAAACGAAATTGC
GTGCAGATCGCTTAGAAGAAGATTCAAGTCAATTGAATGTATTTGCGGAAACGGATTTAGAAGTGATTAAAGAGGCTGTA
AAACAAACACAGCCTGATTTAGTCGTAGTAGACTCTATTCAAACTGTCTATCATCCTGATATCAGTTCAGCACCAGGTTC
AGTATCGCAAGTCAGAGAAAGTACGCAAATCTTGATGGGAATCGCAAAACAGATGAACATTGCGACCTTTATCGTGGGTC
ACGTGACCAAAGAAGGTCAAATTGCCGGACCGCGTTTATTAGAACATATGGTGGATACCGTCTTATACTTCGAAGGCGAT
GAACACCATGCATACAGAATTTTGCGTGCAGTGAAAAACCGTTTCGGTTCAACCAATGAAATGGGTATTTTCGAAATGAA
ACACAGCGGTTTAAAAGGAGTCAAAAACCCTTCAGAAATGTTTTTAGAAGAACGCTCAACGAATGTTGCGGGTTCAACGA
TTGTACCGACTATGGAAGGAACACGTCCTTTATTAATTGAAGTACAAGCCTTAGTCACACCGACGACATTCAATAACCCG
AGACGTATGGCGACTGGAATTGATCATAACCGCTTGAACTTGCTGATGGCGGTCTTAGAGAAGAAAGAAAGCTACCTGCT
TCAGCAGCAAGATGCGTACGTTAAAGTGGCAGGCGGTGTACGTCTGACAGAACCTGCAGTCGACTTGGCTATCATCGCAG
CAGTCGCATCCAGCTTCAAAGACCAGCCGGTCAATGGTATGGATTGCTTTGTCGGTGAGGTTGGTTTAACGGGGGAAGTA
CGTCGTGTATCACGTATTGAACAACGTGTGCAAGAGGCAGCGAAACTCGGATTTAAACGTGTTATTATTCCTAAAACAAA
TATAGGAGGTTGGGATTTCCCTGACAATATTCAAGTCATCGGTGTAACCAGTGTGCATGAAGCATTGAATTTTGCATTGA
TGAAAAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.664
  radA Streptococcus pneumoniae Rx1

60.579

98.465

0.596
  radA Streptococcus pneumoniae D39

60.579

98.465

0.596
  radA Streptococcus pneumoniae R6

60.579

98.465

0.596
  radA Streptococcus pneumoniae TIGR4

60.579

98.465

0.596
  radA Streptococcus mitis NCTC 12261

60.579

98.465

0.596
  radA Streptococcus mitis SK321

60.579

98.465

0.596