Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA90_RS04920 Genome accession   NZ_CP095096
Coordinates   1053618..1054334 (-) Length   238 a.a.
NCBI ID   WP_105994209.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048618..1059334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS04900 (MUA90_04900) - 1049798..1050439 (+) 642 WP_262588550.1 redox-sensing transcriptional repressor Rex -
  MUA90_RS04905 (MUA90_04905) - 1050491..1050715 (-) 225 WP_105994206.1 sulfurtransferase TusA family protein -
  MUA90_RS04910 (MUA90_04910) - 1050758..1051843 (-) 1086 WP_262588551.1 YeeE/YedE family protein -
  MUA90_RS04915 (MUA90_04915) - 1052053..1053534 (+) 1482 WP_262588552.1 GH32 C-terminal domain-containing protein -
  MUA90_RS04920 (MUA90_04920) agrA 1053618..1054334 (-) 717 WP_105994209.1 quorum-sensing response regulator AgrA Regulator
  MUA90_RS04925 (MUA90_04925) agrC 1054337..1055632 (-) 1296 WP_262588553.1 quorum-sensing sensor histidine kinase AgrC -
  MUA90_RS04930 (MUA90_04930) agrD 1055673..1055807 (-) 135 WP_262588554.1 cyclic lactone autoinducer peptide AgrD -
  MUA90_RS04935 (MUA90_04935) - 1055807..1056385 (-) 579 WP_105994212.1 accessory gene regulator AgrB -
  MUA90_RS14060 - 1056784..1056864 (+) 81 WP_105994213.1 delta-lysin family phenol-soluble modulin -
  MUA90_RS04940 (MUA90_04940) - 1057199..1057996 (-) 798 WP_262588555.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27719.52 Da        Isoelectric Point: 4.6392

>NTDB_id=675372 MUA90_RS04920 WP_105994209.1 1053618..1054334(-) (agrA) [Staphylococcus sp. IVB6181]
MKIIICEDDAQQRAHIEEIIENYIMIEEKPLEIALSTADPYEVLEFAKSTNEICCYFLDIQLDADINGIKLGSELRNYDS
VGSIIFITSHSELTYLTFVYKVAAMDFIFKDDPSEMKTRIIDCIETALTRLQLLSKESSVETIELKRGSNSVYVNYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKDLSQLDERFFRCHNSFVLNRNNIEEVISKDREVYFKNGEHCYISVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=675372 MUA90_RS04920 WP_105994209.1 1053618..1054334(-) (agrA) [Staphylococcus sp. IVB6181]
GTGAAAATTATAATCTGTGAAGATGATGCGCAACAACGTGCACATATCGAAGAAATTATTGAAAATTACATTATGATTGA
AGAGAAACCTTTAGAAATCGCACTTTCTACAGCAGATCCTTATGAAGTATTAGAATTTGCGAAATCTACTAATGAGATTT
GCTGCTATTTCTTAGATATTCAATTAGATGCAGATATTAACGGCATTAAATTGGGCAGCGAACTGAGAAACTATGATTCT
GTCGGCAGTATCATATTCATTACCAGTCATAGTGAATTAACTTATCTCACATTTGTATATAAGGTAGCAGCAATGGATTT
CATATTTAAAGATGACCCTTCAGAAATGAAAACACGTATTATCGATTGTATCGAAACTGCTTTAACACGCTTGCAGCTGC
TTTCAAAAGAATCGAGTGTCGAAACTATTGAACTTAAACGCGGCAGCAATTCTGTGTATGTGAATTATGATGATGTGATG
TTCTTTGAATCCTCATCAAAATCACACCGTCTGATTGCCCATTTAGACAATCGTCAAATTGAGTTTTACGGCAGTCTGAA
AGACTTAAGTCAATTAGATGAACGGTTCTTCCGTTGCCACAACAGTTTTGTACTCAATCGCAATAACATTGAAGAAGTCA
TTTCTAAAGATCGAGAAGTCTACTTTAAAAATGGCGAACATTGCTATATATCTGTAAGAAATCTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

79.412

100

0.794