Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG607_RS11820 Genome accession   NZ_CP109392
Coordinates   2553258..2554028 (+) Length   256 a.a.
NCBI ID   WP_329311616.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01537 strain NBC 01537     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2548258..2559028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG607_RS11805 (OG607_11750) - 2548630..2549160 (+) 531 WP_405722301.1 TerD family protein -
  OG607_RS11810 (OG607_11755) - 2549227..2552136 (-) 2910 WP_405722304.1 vitamin B12-dependent ribonucleotide reductase -
  OG607_RS11815 (OG607_11760) nrdR 2552260..2552775 (-) 516 WP_405722306.1 transcriptional regulator NrdR -
  OG607_RS11820 (OG607_11765) dinR/lexA 2553258..2554028 (+) 771 WP_329311616.1 transcriptional repressor LexA Regulator
  OG607_RS11825 (OG607_11770) - 2554094..2556127 (-) 2034 WP_405722310.1 ATP-dependent DNA helicase -
  OG607_RS11830 (OG607_11775) - 2556171..2557934 (-) 1764 WP_405722311.1 IucA/IucC family protein -
  OG607_RS11835 (OG607_11780) - 2558004..2558690 (-) 687 WP_405722313.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27812.51 Da        Isoelectric Point: 7.4046

>NTDB_id=675359 OG607_RS11820 WP_329311616.1 2553258..2554028(+) (dinR/lexA) [Streptomyces sp. NBC_01537 strain NBC 01537]
MTTTASSATLTAQDRSQDRLRPMDAMNDDTPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREIGQ
AVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDTSAVQPTDTAGKPSASYVPLVGRIAAGGPILAEESVEDVFP
LPRQLVGDGELFVLKVVGDSMTEAAIVDGDWVTVRRQQVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEPILG
DEATILGKVVAVLRRV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=675359 OG607_RS11820 WP_329311616.1 2553258..2554028(+) (dinR/lexA) [Streptomyces sp. NBC_01537 strain NBC 01537]
GTGACCACCACCGCAAGCAGCGCCACACTGACCGCCCAGGACCGCTCCCAGGACCGGCTACGCCCAATGGACGCGATGAA
CGACGACACACCCAAGCCCGCACGCTCGCTTCCCGGTCGACCTCCGGGAATCAGGGCGGACAGCTCCGGCCTGACCGACC
GCCAGCGCCGGGTCATCGAGGTGATCCGGGATTCCGTCCAGCGCCGCGGCTACCCACCGTCCATGCGCGAGATCGGCCAG
GCGGTGGGGCTGTCCAGCACCTCGTCGGTGGCCCACCAACTGATGGCCCTGGAGCGCAAGGGCTTCCTGCGCCGTGACCC
GCACCGGCCGCGCGCCTACGAGGTGCGCGGATCGGACACCTCGGCGGTGCAGCCGACCGACACCGCCGGCAAGCCCTCCG
CCTCATATGTGCCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTCGAGGATGTCTTCCCG
CTGCCGCGTCAGCTGGTCGGCGACGGTGAGCTCTTCGTGCTGAAGGTCGTCGGTGACTCGATGACGGAAGCGGCCATCGT
GGACGGTGACTGGGTCACCGTGCGCAGGCAGCAGGTCGCCGAGAACGGCGACATCGTCGCGGCGATGCTCGACGGCGAAG
CCACCGTCAAGCGCTTCAAGCGCGAGGACGGACATGTCTGGCTGCTGCCGCACAACTCCGCGTACGAGCCGATCCTCGGC
GACGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGTTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(49-112)

Peptidase S24-like (Peptidase_S24)

(138-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

82.031

0.375