Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5I25_RS04705 Genome accession   NZ_CP095094
Coordinates   933570..934943 (-) Length   457 a.a.
NCBI ID   WP_009256858.1    Uniprot ID   A0A174AVX6
Organism   Flavonifractor plautii strain VE303-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928570..939943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5I25_RS04675 (K5I25_04675) - 928639..929667 (-) 1029 WP_024724088.1 tyrosine recombinase XerC -
  K5I25_RS04680 (K5I25_04680) - 929767..930291 (-) 525 WP_131970242.1 tyrosine-type recombinase/integrase -
  K5I25_RS04685 (K5I25_04685) - 930468..930779 (-) 312 WP_195325612.1 hypothetical protein -
  K5I25_RS04690 (K5I25_04690) - 930872..931855 (-) 984 WP_196058163.1 hypothetical protein -
  K5I25_RS04695 (K5I25_04695) - 932597..932821 (-) 225 WP_007488969.1 hypothetical protein -
  K5I25_RS04700 (K5I25_04700) - 933019..933237 (+) 219 WP_024724091.1 helix-turn-helix transcriptional regulator -
  K5I25_RS04705 (K5I25_04705) radA 933570..934943 (-) 1374 WP_009256858.1 DNA repair protein RadA Machinery gene
  K5I25_RS04710 (K5I25_04710) - 934940..935692 (-) 753 WP_024724092.1 N-acetylmuramoyl-L-alanine amidase -
  K5I25_RS04715 (K5I25_04715) - 935820..936278 (+) 459 WP_024724093.1 YhcH/YjgK/YiaL family protein -
  K5I25_RS04720 (K5I25_04720) - 936465..936923 (+) 459 WP_024724094.1 spore coat protein CotJB -
  K5I25_RS04725 (K5I25_04725) - 936924..937520 (+) 597 WP_024724095.1 manganese catalase family protein -
  K5I25_RS04730 (K5I25_04730) - 937684..938385 (+) 702 WP_009256861.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49061.50 Da        Isoelectric Point: 5.8607

>NTDB_id=675356 K5I25_RS04705 WP_009256858.1 933570..934943(-) (radA) [Flavonifractor plautii strain VE303-08]
MKAKTLFYCTECGNETPKWSGQCPACRAWNTLVERPAEPKKRSAAAASVAGGGLRGTGNRPRPMREVETTHELRFETGMN
ELDRVLGGGAVKGSLVLVGGAPGIGKSTLMLQICDNLCRFASVLYVSGEESERQIKLRAERLHVRGEGMYLLAETNLEDV
LESVNELKPDVLIVDSIQTLYNGDLTTAPGSVGQVKDCTMALMQLAKGQGITVFVIGHVNKEGSIAGPKVLEHMVDCVLY
FEGEQQNSYRILRAAKNRFGATNEIGVFEMEDSGLSEVPNPSEMLLSGRPQDTPGTCVTCVMEGVRPVLAEVQALLAPTS
FNVPRRTANGFDFNRANLLLAVLEKRGGLMVSSCDAYINVIGGLFLDEPAADLAMIVALASSFRDKPVSGDLAAIGEVGL
TGELRSVNALGQRLSEVRRLGFTKCLIPARTGGKLDTPDGLQLIPVRNIREALAALL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=675356 K5I25_RS04705 WP_009256858.1 933570..934943(-) (radA) [Flavonifractor plautii strain VE303-08]
ATGAAAGCAAAAACACTGTTTTATTGTACCGAGTGCGGAAATGAAACCCCAAAGTGGTCCGGCCAATGTCCCGCCTGCCG
GGCATGGAATACCCTTGTGGAGCGGCCGGCAGAGCCGAAAAAAAGGAGTGCGGCCGCCGCCTCTGTCGCTGGGGGCGGCC
TGCGGGGAACCGGCAACCGGCCCAGGCCCATGCGCGAGGTGGAAACCACCCACGAGCTCCGCTTTGAAACCGGGATGAAT
GAGCTGGACCGGGTGCTGGGCGGGGGAGCGGTGAAGGGCTCTCTGGTGCTGGTGGGGGGTGCCCCCGGCATCGGCAAGTC
CACCCTGATGCTCCAGATCTGCGACAACCTGTGCCGTTTTGCCTCTGTGCTCTATGTCTCCGGGGAGGAGTCGGAGCGGC
AGATCAAGCTGCGGGCGGAGCGGCTCCATGTCCGTGGAGAGGGAATGTACCTTCTGGCTGAGACCAACCTGGAGGATGTG
CTGGAGTCGGTCAACGAGCTGAAGCCAGACGTGCTAATTGTGGACTCCATCCAGACCCTCTACAACGGGGATCTGACCAC
CGCTCCCGGCAGCGTGGGACAGGTAAAGGACTGTACTATGGCGCTGATGCAGTTGGCGAAGGGGCAGGGGATCACCGTCT
TTGTCATCGGACACGTCAATAAGGAGGGGTCTATCGCAGGCCCCAAGGTGCTGGAGCACATGGTGGACTGCGTGCTCTAT
TTCGAAGGTGAGCAGCAGAACTCCTACCGCATTCTGCGCGCGGCAAAGAACCGTTTCGGCGCCACCAATGAGATCGGCGT
CTTTGAGATGGAGGACTCCGGCCTGAGCGAAGTGCCCAATCCATCAGAGATGCTGCTCTCGGGACGGCCTCAGGACACCC
CTGGCACCTGCGTCACCTGCGTCATGGAGGGAGTGCGGCCTGTTTTGGCCGAGGTACAGGCCCTGCTGGCGCCCACCAGC
TTCAATGTACCGCGCAGGACCGCCAACGGCTTCGACTTCAACCGGGCGAATCTGTTGCTGGCTGTTCTGGAAAAGCGGGG
TGGACTGATGGTCAGTTCCTGTGACGCCTATATTAACGTCATCGGCGGCTTGTTTTTGGACGAGCCCGCCGCCGACCTAG
CCATGATCGTCGCACTGGCTTCCAGCTTCCGAGACAAGCCCGTGTCTGGAGATCTGGCCGCCATCGGCGAGGTTGGCCTG
ACCGGAGAGCTGCGCTCAGTCAATGCGTTGGGCCAGCGGCTGAGCGAGGTGCGCCGTCTGGGGTTCACAAAGTGCCTGAT
CCCAGCCCGTACCGGCGGAAAGCTGGACACCCCGGATGGCCTGCAGCTCATTCCGGTTCGCAACATCCGCGAGGCGCTGG
CCGCGCTTTTGTAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(366-455)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A174AVX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.851

99.781

0.527
  radA Streptococcus pneumoniae Rx1

50

99.781

0.499
  radA Streptococcus pneumoniae D39

50

99.781

0.499
  radA Streptococcus pneumoniae R6

50

99.781

0.499
  radA Streptococcus pneumoniae TIGR4

50

99.781

0.499
  radA Streptococcus mitis NCTC 12261

50

99.781

0.499
  radA Streptococcus mitis SK321

50

99.781

0.499