Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MUU70_RS16395 Genome accession   NZ_CP095093
Coordinates   3340163..3340852 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain D103     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3335163..3345852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU70_RS16360 (MUU70_16340) - 3335361..3335843 (-) 483 WP_071392362.1 flagellar protein FlgN -
  MUU70_RS16365 (MUU70_16345) flgM 3335858..3336124 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MUU70_RS16370 (MUU70_16350) - 3336194..3336613 (-) 420 WP_326355154.1 TIGR03826 family flagellar region protein -
  MUU70_RS16375 (MUU70_16355) comFC 3336687..3337376 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  MUU70_RS16380 (MUU70_16360) - 3337382..3337666 (-) 285 WP_017418816.1 competence protein ComFB -
  MUU70_RS16385 (MUU70_16365) comFA 3337724..3339109 (-) 1386 WP_367069222.1 DEAD/DEAH box helicase Machinery gene
  MUU70_RS16390 (MUU70_16370) - 3339217..3340065 (-) 849 WP_003151387.1 DegV family protein -
  MUU70_RS16395 (MUU70_16375) degU 3340163..3340852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MUU70_RS16400 (MUU70_16380) degS 3340929..3342092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  MUU70_RS16405 (MUU70_16385) - 3342315..3342962 (+) 648 WP_060657503.1 YigZ family protein -
  MUU70_RS16410 (MUU70_16390) - 3342967..3344142 (+) 1176 WP_326355155.1 LCP family protein -
  MUU70_RS16415 (MUU70_16395) - 3344232..3345308 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=675342 MUU70_RS16395 WP_003219701.1 3340163..3340852(-) (degU) [Bacillus velezensis strain D103]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=675342 MUU70_RS16395 WP_003219701.1 3340163..3340852(-) (degU) [Bacillus velezensis strain D103]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1