Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JMUB0001_RS04225 Genome accession   NZ_AP014956
Coordinates   881681..882397 (-) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis strain TW2795     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 876681..887397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB0001_RS04210 (JMUB0001_823) - 877999..878949 (+) 951 WP_037551080.1 LacI family DNA-binding transcriptional regulator -
  JMUB0001_RS04215 (JMUB0001_824) - 879175..880650 (+) 1476 WP_049428100.1 sucrose-6-phosphate hydrolase -
  JMUB0001_RS04220 (JMUB0001_825) - 880657..881616 (+) 960 WP_049428102.1 carbohydrate kinase -
  JMUB0001_RS04225 (JMUB0001_826) agrA 881681..882397 (-) 717 WP_002436958.1 LytTR family DNA-binding domain-containing protein Regulator
  JMUB0001_RS04230 (JMUB0001_827) - 882413..883702 (-) 1290 WP_070597560.1 GHKL domain-containing protein -
  JMUB0001_RS04235 (JMUB0001_828) - 883725..883865 (-) 141 WP_049428106.1 cyclic lactone autoinducer peptide -
  JMUB0001_RS04240 (JMUB0001_829) - 883868..884434 (-) 567 WP_049428109.1 accessory gene regulator AgrB -
  JMUB0001_RS04245 (JMUB0001_830) - 885196..885981 (-) 786 WP_037551089.1 carbon-nitrogen family hydrolase -
  JMUB0001_RS04250 (JMUB0001_831) - 886083..886709 (-) 627 WP_049428113.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=67533 JMUB0001_RS04225 WP_002436958.1 881681..882397(-) (agrA) [Staphylococcus capitis strain TW2795]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=67533 JMUB0001_RS04225 WP_002436958.1 881681..882397(-) (agrA) [Staphylococcus capitis strain TW2795]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGATATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGACTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCTTCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTAAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912

Multiple sequence alignment