Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MUU70_RS11890 Genome accession   NZ_CP095093
Coordinates   2466050..2466670 (-) Length   206 a.a.
NCBI ID   WP_367069090.1    Uniprot ID   -
Organism   Bacillus velezensis strain D103     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2461050..2471670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU70_RS11860 (MUU70_11875) rpsT 2461350..2461616 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  MUU70_RS11865 (MUU70_11880) holA 2461633..2462674 (-) 1042 Protein_2288 DNA polymerase III subunit delta -
  MUU70_RS11870 (MUU70_11885) - 2462714..2462868 (-) 155 Protein_2289 hypothetical protein -
  MUU70_RS11875 (MUU70_11890) - 2462909..2463043 (+) 135 WP_003152870.1 YqzM family protein -
  MUU70_RS11880 (MUU70_11895) comEC 2463062..2465413 (-) 2352 WP_367069089.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MUU70_RS11885 (MUU70_11900) - 2465414..2465983 (-) 570 WP_003152868.1 ComE operon protein 2 -
  MUU70_RS11890 (MUU70_11905) comEA 2466050..2466670 (-) 621 WP_367069090.1 helix-hairpin-helix domain-containing protein Machinery gene
  MUU70_RS11895 (MUU70_11910) comER 2466729..2467550 (+) 822 WP_015240246.1 late competence protein ComER -
  MUU70_RS11900 (MUU70_11915) - 2467619..2468356 (-) 738 WP_031378935.1 class I SAM-dependent methyltransferase -
  MUU70_RS11905 (MUU70_11920) rsfS 2468353..2468709 (-) 357 WP_003152864.1 ribosome silencing factor -
  MUU70_RS11910 (MUU70_11925) yqeK 2468727..2469287 (-) 561 WP_032856887.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MUU70_RS11915 (MUU70_11930) - 2469277..2469846 (-) 570 WP_003152860.1 nicotinate-nucleotide adenylyltransferase -
  MUU70_RS11920 (MUU70_11935) yhbY 2469857..2470147 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  MUU70_RS11925 (MUU70_11940) aroE 2470141..2470983 (-) 843 WP_367069091.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22435.64 Da        Isoelectric Point: 6.4940

>NTDB_id=675326 MUU70_RS11890 WP_367069090.1 2466050..2466670(-) (comEA) [Bacillus velezensis strain D103]
MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTPSASASVADKKDTADDKIMIDVKGAVRKPG
VYEMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAVGEKENAAVNINTASLDELQAISG
VGQKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 621 bp        

>NTDB_id=675326 MUU70_RS11890 WP_367069090.1 2466050..2466670(-) (comEA) [Bacillus velezensis strain D103]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACACCCTCAGCCT
CAGCATCCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATGTGAAAGGCGCGGTCCGAAAACCCGGC
GTGTATGAAATGAAAGCGGGAGACAGAGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATT
GAATGTTAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGA
AAACAGCAGTTGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGG
GTGGGGCAGAAAAAAGCGGAAGCCATTATCGCCTACCGAGAAGAAAACGGACGGTTTCAGACTGCTGAAGATTTGATGAA
TGTATCAGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(143-204)

SLBB domain (SLBB)

(70-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.333

93.204

0.544