Detailed information NTG0675313

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG750_RS24575
• Genome accession: NZ_CP109391
• Coordinates: 5446558..5447559 (+)
• Length: 333 a.a.
• NCBI ID: WP_307628330.1
• Uniprot ID: A0ABU0RV32
• Organism: Streptomyces sp. NBC_01538 strain NBC 01538
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5441558..5452559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG750_RS24550 (OG750_24500)	-	5441839..5442480 (+)	642	WP_405771921.1	TetR/AcrR family transcriptional regulator	-
OG750_RS24555 (OG750_24505)	-	5442646..5444181 (+)	1536	WP_405771928.1	MFS transporter	-
OG750_RS24560 (OG750_24510)	-	5444299..5444808 (-)	510	WP_405771931.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG750_RS24565 (OG750_24515)	-	5444966..5445757 (+)	792	WP_405771934.1	dioxygenase	-
OG750_RS24570 (OG750_24520)	-	5445815..5446333 (-)	519	WP_053745020.1	GNAT family N-acetyltransferase	-
OG750_RS24575 (OG750_24525)	rpoS	5446558..5447559 (+)	1002	WP_307628330.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG750_RS24580 (OG750_24530)	-	5448151..5448729 (+)	579	WP_405777433.1	TetR family transcriptional regulator	-
OG750_RS24585 (OG750_24535)	-	5448740..5449708 (-)	969	WP_405771938.1	helix-turn-helix transcriptional regulator	-
OG750_RS24590 (OG750_24540)	-	5449771..5451297 (+)	1527	WP_405771941.1	MFS transporter	-
OG750_RS24595 (OG750_24545)	-	5451491..5452252 (+)	762	WP_053745015.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37044.88 Da
• Isoelectric Point: 5.3866

>NTDB_id=675313 OG750_RS24575 WP_307628330.1 5446558..5447559(+) (rpoS) [Streptomyces sp. NBC_01538 strain NBC 01538]
MATRAVARRTSSATGGTVGGARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGETEAKA
DATVQELEALVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPAEIAAELDTNAARVIDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=675313 OG750_RS24575 WP_307628330.1 5446558..5447559(+) (rpoS) [Streptomyces sp. NBC_01538 strain NBC 01538]
ATGGCAACCCGTGCCGTCGCCCGTCGTACGTCTTCCGCCACCGGCGGGACCGTCGGCGGCGCACGCAGTGTTCGCGCCCA
TGGCGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACTTGGACGAGATAGCGCGAACCCCGTTGCTCGACGCCGCGA
AGGAGGTCGAGCTGTCGCAGACCATCGAAGCCGGTGTGTTCGCACGCCAGATCCTCGACGGCGAGACCGAAGCGAAGGCG
GACGCCACCGTCCAGGAGCTGGAGGCGCTCGTCGCCGAGAGCGAGCGGGCCAAGGACGTCTTCATTCGCTCCAACCTGCG
ACTGGTCGTCGCCGTGGCGCGCCGCTACCCCCGCAGCGGCCTGCCCCTTCTCGACCTGATCCAGGAGGGCAACGCCGGCT
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCC
ATCACCCGTTCCATAGCGGACCAGTCGCGCACGATCCGCCTCCCTGTCCACCTGGTCGAGGAACTGGGCCGGATCAGGCG
CGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGGGACCCGGAACCCGCGGAGATCGCCGCCGAGCTGGACACGAACGCGG
CGCGGGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGTCGGTGGACGACGACGGGGACACCCAG
TTCGGTGACCTCCTCGAGGACACGTCGGCGGTGTCGCCGGAGCAGTCCGTGCTGACCCTTCTGCGCAGCGAGGAACTGGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCTTCCATCATCAAGATGCGGTACGGCATCGTCGACGGCCGGGAACGCA
CGCTGACGGAGGTCGGCAAGGAGCACGGGCTGACCCGTGAGCGGATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCGCGGGACACCGGGTTCGACGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (270-322)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (35-68)

• Sigma-70 region 2 (Sigma70_r2) (101-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	89.79	0.36