Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MUU70_RS10150 Genome accession   NZ_CP095093
Coordinates   2103519..2104127 (+) Length   202 a.a.
NCBI ID   WP_367070077.1    Uniprot ID   -
Organism   Bacillus velezensis strain D103     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2098519..2109127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU70_RS10110 (MUU70_10125) - 2099572..2100078 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  MUU70_RS10115 (MUU70_10130) - 2100217..2100630 (+) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  MUU70_RS10120 (MUU70_10135) - 2100660..2101094 (-) 435 WP_367069064.1 YppG family protein -
  MUU70_RS10125 (MUU70_10140) - 2101281..2101463 (+) 183 WP_003153532.1 YppF family protein -
  MUU70_RS10130 (MUU70_10145) - 2101502..2101870 (-) 369 WP_003153529.1 YppE family protein -
  MUU70_RS10135 (MUU70_10150) - 2101916..2102161 (-) 246 WP_243662188.1 DUF5446 family protein -
  MUU70_RS10140 (MUU70_10155) sspM 2102367..2102471 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  MUU70_RS10145 (MUU70_10160) - 2102515..2103477 (-) 963 WP_367069065.1 DUF2515 domain-containing protein -
  MUU70_RS10150 (MUU70_10165) recU 2103519..2104127 (+) 609 WP_367070077.1 Holliday junction resolvase RecU Machinery gene
  MUU70_RS10155 (MUU70_10170) - 2104166..2106949 (+) 2784 WP_367069066.1 PBP1A family penicillin-binding protein -
  MUU70_RS10160 (MUU70_10175) - 2107027..2107518 (-) 492 WP_046559838.1 YpoC family protein -
  MUU70_RS10165 (MUU70_10180) nth 2107515..2108174 (-) 660 WP_094247837.1 endonuclease III -
  MUU70_RS10170 (MUU70_10185) dnaD 2108193..2108891 (-) 699 WP_070082021.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23752.89 Da        Isoelectric Point: 9.5707

>NTDB_id=675312 MUU70_RS10150 WP_367070077.1 2103519..2104127(+) (recU) [Bacillus velezensis strain D103]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=675312 MUU70_RS10150 WP_367070077.1 2103519..2104127(+) (recU) [Bacillus velezensis strain D103]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896