Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MUU70_RS01780 Genome accession   NZ_CP095093
Coordinates   327973..328410 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain D103     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 322973..333410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU70_RS01740 (MUU70_01740) - 323557..323718 (-) 162 Protein_302 hypothetical protein -
  MUU70_RS01745 (MUU70_01745) - 323835..325037 (+) 1203 WP_043866820.1 GTP-binding protein -
  MUU70_RS01750 (MUU70_01750) - 325102..326238 (+) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  MUU70_RS01755 (MUU70_01755) - 326253..326687 (+) 435 WP_021494203.1 RDD family protein -
  MUU70_RS01760 (MUU70_01760) - 326760..327080 (+) 321 WP_015388719.1 YckD family protein -
  MUU70_RS01765 (MUU70_01765) - 327178..327294 (+) 117 WP_182069797.1 family 1 glycosylhydrolase -
  MUU70_RS01770 (MUU70_01770) - 327293..327512 (+) 220 Protein_308 family 1 glycosylhydrolase -
  MUU70_RS01775 (MUU70_01775) nin/comJ 327552..327950 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  MUU70_RS01780 (MUU70_01780) nucA/comI 327973..328410 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MUU70_RS01785 (MUU70_01785) hxlB 328771..329328 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  MUU70_RS01790 (MUU70_01790) hxlA 329325..329960 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  MUU70_RS01795 (MUU70_01795) - 330192..330554 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=675282 MUU70_RS01780 WP_003156588.1 327973..328410(-) (nucA/comI) [Bacillus velezensis strain D103]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=675282 MUU70_RS01780 WP_003156588.1 327973..328410(-) (nucA/comI) [Bacillus velezensis strain D103]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641