Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MUK77_RS15405 Genome accession   NZ_CP095086
Coordinates   3179398..3180027 (-) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli isolate EC5654     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174398..3185027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK77_RS15390 (MUK77_15390) helD 3174640..3176694 (-) 2055 WP_001350178.1 DNA helicase IV -
  MUK77_RS15395 (MUK77_15395) yccF 3176817..3177263 (+) 447 WP_118253330.1 YccF domain-containing protein -
  MUK77_RS15400 (MUK77_15400) yccS 3177273..3179435 (+) 2163 WP_072197900.1 YccS family putative transporter -
  MUK77_RS15405 (MUK77_15405) sxy/tfoX 3179398..3180027 (-) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MUK77_RS15410 (MUK77_15410) sulA 3180246..3180755 (+) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  MUK77_RS15415 (MUK77_15415) ompA 3181111..3182151 (+) 1041 WP_001350588.1 porin OmpA -
  MUK77_RS15420 (MUK77_15420) matP 3182229..3182681 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  MUK77_RS15425 (MUK77_15425) ycbZ 3182867..3184627 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=675160 MUK77_RS15405 WP_000839144.1 3179398..3180027(-) (sxy/tfoX) [Escherichia coli isolate EC5654]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=675160 MUK77_RS15405 WP_000839144.1 3179398..3180027(-) (sxy/tfoX) [Escherichia coli isolate EC5654]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995