Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA89_RS25025 Genome accession   NZ_CP109379
Coordinates   5475879..5476964 (+) Length   361 a.a.
NCBI ID   WP_266609780.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01546     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5470879..5481964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA89_RS25005 (OHA89_24940) - 5471449..5472192 (+) 744 WP_406367147.1 vancomycin high temperature exclusion protein -
  OHA89_RS25010 (OHA89_24945) - 5472259..5473029 (+) 771 WP_406367149.1 glucose 1-dehydrogenase -
  OHA89_RS25015 (OHA89_24950) - 5473165..5475243 (+) 2079 WP_266609778.1 molybdopterin oxidoreductase family protein -
  OHA89_RS25020 (OHA89_24955) - 5475265..5475471 (-) 207 WP_406367151.1 hypothetical protein -
  OHA89_RS25025 (OHA89_24960) rpoS 5475879..5476964 (+) 1086 WP_266609780.1 RNA polymerase sigma factor Regulator
  OHA89_RS25030 (OHA89_24965) rcrQ 5477044..5478966 (-) 1923 WP_257556460.1 ABC transporter ATP-binding protein Regulator
  OHA89_RS25035 (OHA89_24970) rcrP 5478963..5480696 (-) 1734 WP_266609781.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40667.28 Da        Isoelectric Point: 4.8560

>NTDB_id=675155 OHA89_RS25025 WP_266609780.1 5475879..5476964(+) (rpoS) [Streptomyces sp. NBC_01546]
MQTQTQPPTATLTVTDQPEREAEAMDDEPEPLDLAEQIEQVEQVPAQRKRVDSGGGAASPSADLFRQYLREIGRIPLLTA
AEEVDLARRVEAGLFAEEKLAGTPDLDSQLAFDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLG
LIRAVEKFDYARGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAAHLELTP
ERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLDDGRPR
TLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=675155 OHA89_RS25025 WP_266609780.1 5475879..5476964(+) (rpoS) [Streptomyces sp. NBC_01546]
GTGCAGACCCAGACGCAGCCCCCGACCGCCACCCTGACCGTGACCGATCAGCCCGAGCGCGAGGCCGAGGCCATGGACGA
CGAGCCAGAGCCCCTCGACCTGGCCGAACAGATCGAACAGGTCGAGCAGGTGCCGGCACAGCGCAAGCGCGTGGACAGCG
GGGGCGGAGCGGCGAGTCCGTCCGCCGACCTGTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCC
GCCGAGGAGGTCGACCTCGCGCGGCGCGTCGAAGCCGGCCTGTTCGCCGAGGAGAAACTCGCCGGCACCCCGGACCTCGA
CTCCCAGCTCGCCTTCGACCTCGACAAACTCGTCGTCATGGGGCGCATGGCCAAACGCCGGCTCATCGAGTCGAACCTCC
GCCTCGTGGTCTCCGTCGCGAAGCGGTACGTGGGCCGCGGGCTCACCATGCTCGACCTCGTGCAAGAAGGGAACCTCGGG
CTCATACGGGCCGTTGAGAAGTTCGACTACGCCCGCGGGTTCAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGC
GATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTGCCCGTCCACGTCGTGGAGCTGATCAACCGCGTCGTGC
GCGTACAGCGCCGCATGCTCCAGGAGCGCGGGTACGAGCCCACCGCCGAAGAGGTCGCCGCCCACCTGGAACTGACCCCC
GAGCGGGTCCTCGAGGTGCTCCGCCTCGCGCAGGAGCCGGTCTCCCTGCACGCCCCGGTCGGAGAAGAGGACGACGTCGC
GCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCTCCCGTGGAGTCCGCCGCGTTCTTCCTGCTGCGCGAGCACCTGG
AGGCCGTGCTGTCGACCCTCGGCGAGCGCGAGCGCAAGGTCGTCCAGCTGCGGTACGGGCTCGACGACGGGCGCCCGCGC
ACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCT
GCGCGATCACGCCTTCGCCGACCAGCTGAGGGGCTATCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(207-283)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(63-96)

Sigma-70, region 4 (Sigma70_r4)

(296-348)

Sigma-70 region 2 (Sigma70_r2)

(128-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.71

81.163

0.363