Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA89_RS21815 Genome accession   NZ_CP109379
Coordinates   4747349..4748326 (+) Length   325 a.a.
NCBI ID   WP_215149180.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01546     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4742349..4753326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA89_RS21790 (OHA89_21730) - 4742615..4743340 (+) 726 WP_266609413.1 TetR/AcrR family transcriptional regulator -
  OHA89_RS21795 (OHA89_21735) - 4743412..4744947 (+) 1536 WP_215149183.1 MFS transporter -
  OHA89_RS21800 (OHA89_21740) - 4745087..4745869 (+) 783 WP_266609414.1 dioxygenase -
  OHA89_RS21805 (OHA89_21745) - 4745866..4746510 (-) 645 WP_266609415.1 Uma2 family endonuclease -
  OHA89_RS21810 (OHA89_21750) - 4746614..4747153 (-) 540 WP_266609416.1 GNAT family N-acetyltransferase -
  OHA89_RS21815 (OHA89_21755) rpoS 4747349..4748326 (+) 978 WP_215149180.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHA89_RS21820 (OHA89_21760) - 4748391..4749332 (-) 942 WP_406366884.1 helix-turn-helix transcriptional regulator -
  OHA89_RS21825 (OHA89_21765) - 4749396..4751012 (+) 1617 WP_406366885.1 MFS transporter -
  OHA89_RS21830 (OHA89_21775) - 4751240..4752010 (-) 771 WP_266609418.1 DUF6227 family protein -
  OHA89_RS21835 (OHA89_21780) - 4752203..4752853 (+) 651 WP_406366887.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36518.21 Da        Isoelectric Point: 5.0356

>NTDB_id=675145 OHA89_RS21815 WP_215149180.1 4747349..4748326(+) (rpoS) [Streptomyces sp. NBC_01546]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQLLDGVIEREGTTPSREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEVAAELDSTEKRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=675145 OHA89_RS21815 WP_215149180.1 4747349..4748326(+) (rpoS) [Streptomyces sp. NBC_01546]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTGTCCCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGCTCCTCGACGGAGTCATAGAGCGCGAGGGCACGACACCTTCCCGCGAGGAGCTCGAG
GCGCTGGCCGCCGAGGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTGCGCCTCGTGGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACTTGGTCGAGGAGCTCGGCCGGATCCGCCGCGTCCAGCGTGAGTTCAACCGCGA
GCACGGCCGGGACCCGGAGCACGCCGAAGTCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGTCCGTGGACGACGACGGCGACACGCAGTTCGGCGACCTCCTCGAGGACACC
TCCGCCATCTCGCCGGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTCCTGGAGCTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.333

92.308

0.363