Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MP619_RS10540 Genome accession   NZ_CP095081
Coordinates   2116011..2117372 (-) Length   453 a.a.
NCBI ID   WP_129556330.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2111011..2122372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS10515 (MP619_10485) - 2111732..2113000 (-) 1269 WP_129556335.1 MFS transporter -
  MP619_RS10520 (MP619_10490) - 2113095..2113796 (-) 702 WP_129556334.1 hypothetical protein -
  MP619_RS10525 (MP619_10495) - 2113800..2114246 (-) 447 WP_129556333.1 LytTR family DNA-binding domain-containing protein -
  MP619_RS10530 (MP619_10500) - 2114475..2115191 (-) 717 WP_129556332.1 TIGR00266 family protein -
  MP619_RS10535 (MP619_10505) - 2115327..2115821 (-) 495 WP_268227771.1 carbonic anhydrase -
  MP619_RS10540 (MP619_10510) radA 2116011..2117372 (-) 1362 WP_129556330.1 DNA repair protein RadA Machinery gene
  MP619_RS10545 (MP619_10515) - 2117455..2117901 (-) 447 WP_129556329.1 dUTP diphosphatase -
  MP619_RS10550 (MP619_10520) - 2118009..2118776 (-) 768 WP_015058074.1 epoxyqueuosine reductase QueH -
  MP619_RS10555 (MP619_10525) - 2118895..2120679 (-) 1785 WP_129556328.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49340.61 Da        Isoelectric Point: 6.0944

>NTDB_id=675117 MP619_RS10540 WP_129556330.1 2116011..2117372(-) (radA) [Streptococcus dysgalactiae strain WJ001]
MAKKKANFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=675117 MP619_RS10540 WP_129556330.1 2116011..2117372(-) (radA) [Streptococcus dysgalactiae strain WJ001]
ATAGCAAAGAAAAAAGCAAACTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
TTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTCGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGCTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAACGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTAAATCCAGATTTCTTGATTATTGATTCTATCCAGACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAATATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGGACTTTGGCTGGTCCTCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGTCAGGTCTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAACCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGTTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTGGCCA
TCGCATCCAGTTATAAGGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.283

99.779

0.861
  radA Streptococcus pneumoniae Rx1

86.062

99.779

0.859
  radA Streptococcus pneumoniae D39

86.062

99.779

0.859
  radA Streptococcus pneumoniae R6

86.062

99.779

0.859
  radA Streptococcus pneumoniae TIGR4

86.062

99.779

0.859
  radA Streptococcus mitis SK321

86.062

99.779

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625