Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OH781_RS28370 Genome accession   NZ_CP109376
Coordinates   6331952..6332749 (-) Length   265 a.a.
NCBI ID   WP_354394602.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01550     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6326952..6337749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH781_RS28355 (OH781_28385) - 6326993..6327874 (+) 882 WP_354394608.1 GNAT family N-acetyltransferase -
  OH781_RS28360 (OH781_28390) - 6327935..6329794 (+) 1860 WP_406372276.1 IucA/IucC family protein -
  OH781_RS28365 (OH781_28395) - 6329845..6331815 (+) 1971 WP_313939541.1 ATP-dependent DNA helicase -
  OH781_RS28370 (OH781_28400) dinR/lexA 6331952..6332749 (-) 798 WP_354394602.1 transcriptional repressor LexA Regulator
  OH781_RS28375 (OH781_28405) nrdR 6333294..6333806 (+) 513 WP_030974103.1 transcriptional regulator NrdR -
  OH781_RS28380 (OH781_28410) - 6333967..6336870 (+) 2904 WP_354394599.1 vitamin B12-dependent ribonucleotide reductase -
  OH781_RS28385 (OH781_28415) - 6337077..6337613 (-) 537 WP_354394597.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28788.53 Da        Isoelectric Point: 7.4759

>NTDB_id=674998 OH781_RS28370 WP_354394602.1 6331952..6332749(-) (dinR/lexA) [Streptomyces sp. NBC_01550]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=674998 OH781_RS28370 WP_354394602.1 6331952..6332749(-) (dinR/lexA) [Streptomyces sp. NBC_01550]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCAT
GAATGACTCAGTCAGGAACACGGAGGGGCCAGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCC
GAGCGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTAC
CCACCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCTCTGGA
ACGCAAGGGCTTCCTCCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGC
CGACCGACACGAGCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCC
GAGGAATCGGTCGAAGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGG
TGACTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACGGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACA
TCGTGGCCGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCAC
AACTCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37