Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUO14_RS01415 Genome accession   NZ_CP095074
Coordinates   263134..264858 (-) Length   574 a.a.
NCBI ID   WP_244753304.1    Uniprot ID   -
Organism   Halobacillus shinanisalinarum strain SSTM10-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258134..269858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO14_RS01395 (MUO14_01395) - 258383..259129 (+) 747 WP_244753301.1 PolC-type DNA polymerase III -
  MUO14_RS01400 (MUO14_01400) - 259149..260498 (-) 1350 WP_244753302.1 aspartate kinase -
  MUO14_RS01405 (MUO14_01405) spo0A 260614..261387 (-) 774 WP_244753303.1 sporulation transcription factor Spo0A -
  MUO14_RS01410 (MUO14_01410) spoIVB 261623..262891 (-) 1269 WP_255822149.1 SpoIVB peptidase -
  MUO14_RS01415 (MUO14_01415) recN 263134..264858 (-) 1725 WP_244753304.1 DNA repair protein RecN Machinery gene
  MUO14_RS01420 (MUO14_01420) ahrC 264877..265326 (-) 450 WP_244753305.1 transcriptional regulator AhrC/ArgR -
  MUO14_RS01425 (MUO14_01425) - 265389..266213 (-) 825 WP_244755440.1 TlyA family RNA methyltransferase -
  MUO14_RS01430 (MUO14_01430) dxs 266215..268104 (-) 1890 WP_244753306.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MUO14_RS01435 (MUO14_01435) - 268116..268715 (-) 600 WP_244753307.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65255.80 Da        Isoelectric Point: 4.8847

>NTDB_id=674989 MUO14_RS01415 WP_244753304.1 263134..264858(-) (recN) [Halobacillus shinanisalinarum strain SSTM10-2]
MLTELSIKDFAIIDQVSITFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSIEFVRHGAAKAEIEGLFTVQTGHPVYQKG
EQFGVKIGEDGMVVLQRTITHQGKSICRVNGKLVTLGILKEFGYTLIDIHSQHETQSLMDPDYHIELLDMFAKDQLRTSL
DEYKQLYSKYQTVKKRYRELSENEQEMAQRLDLLEFQLRELQEAELRPYEDEELEEERKKLMNYEKVYQGIHDAYYALYG
EQKGLDWLSLAMNSLESTSDYDNHLTKLSEDMSNSYYVIEELTFQLSSQMSELEFDPERLNEIESRLNELNRLKKKYGHT
VENMMEYASEIEEEIDEIKHKDSHLHKLEQQIKELGEDAVLEAKNIHDIRIETSKQLSELVHSELTDLYLEKASFQADIS
IKEGSQGPEFEGKQVRLLPNGFNTITFLITTNPGEPLKEIHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVSG
RVAQAIAEKIHGISVGSQVLCISHLPQVAAMADTHVRIEKNINNQRTSTVVTELSEEDKADELSRMITGAELTNTTLEHA
RELLKLASKHKQKA

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=674989 MUO14_RS01415 WP_244753304.1 263134..264858(-) (recN) [Halobacillus shinanisalinarum strain SSTM10-2]
ATGTTGACGGAATTATCCATAAAAGATTTTGCCATTATTGATCAAGTTTCCATTACTTTTAAAGAAGGACTCACGGTTCT
AACTGGTGAGACAGGAGCAGGAAAATCCATCATTATCGATGCCATTCAACTGCTATCCGGCGGGCGCGGCTCTATAGAGT
TTGTCCGGCACGGTGCAGCTAAAGCAGAAATTGAGGGGTTATTTACCGTGCAAACGGGGCATCCTGTTTATCAAAAGGGT
GAGCAGTTTGGTGTGAAGATTGGTGAAGATGGAATGGTTGTGCTGCAACGGACAATAACCCATCAAGGGAAAAGTATTTG
CCGGGTTAATGGAAAACTTGTGACCCTAGGCATCCTAAAAGAGTTCGGCTATACCTTAATTGATATCCACAGCCAACATG
AAACACAATCGTTAATGGATCCCGACTACCATATTGAATTACTCGATATGTTTGCTAAAGATCAGCTTCGCACTTCCTTA
GATGAATACAAACAATTGTATTCAAAATACCAAACGGTAAAAAAACGCTATAGGGAGCTTAGTGAGAATGAACAGGAAAT
GGCTCAACGTTTAGACTTACTTGAATTTCAGCTTAGGGAACTTCAGGAAGCTGAATTGCGTCCGTATGAGGATGAGGAGC
TTGAGGAAGAACGTAAAAAGCTTATGAATTATGAGAAAGTGTATCAAGGAATTCACGATGCTTATTATGCTTTATATGGA
GAACAAAAAGGCTTAGATTGGTTAAGTCTTGCAATGAATTCATTAGAAAGTACCTCAGATTATGATAACCATTTGACTAA
GCTCTCTGAAGATATGTCAAACAGCTATTATGTTATTGAAGAATTGACTTTTCAATTAAGCAGCCAGATGTCTGAGCTTG
AATTTGACCCCGAGCGTTTAAATGAGATAGAATCACGCTTAAACGAACTTAATCGATTAAAAAAGAAATATGGTCACACA
GTAGAAAACATGATGGAATATGCCTCAGAAATAGAAGAAGAAATCGATGAAATTAAACATAAAGATTCCCATCTTCACAA
ATTAGAACAGCAAATAAAGGAACTTGGTGAGGATGCTGTCTTAGAAGCTAAGAATATCCATGATATACGAATCGAAACAT
CAAAACAGTTATCCGAACTTGTTCATTCGGAGTTAACAGACCTTTACTTAGAAAAAGCCTCATTTCAAGCGGATATCTCA
ATAAAGGAAGGAAGTCAGGGTCCCGAATTTGAAGGAAAACAAGTACGGCTGCTCCCTAATGGGTTCAACACCATTACCTT
TCTAATTACAACGAATCCAGGTGAGCCTCTAAAGGAAATACACAAAGTAGCTTCTGGAGGCGAGATGTCGCGCATTATGC
TAGCGCTAAAACGTATTTTTTCACGACATCAAGGTGTCACAAGTGTCATCTTTGATGAGGTGGACACGGGCGTAAGTGGA
AGAGTAGCACAGGCAATTGCAGAAAAGATCCATGGTATTTCAGTCGGTTCGCAAGTGCTTTGCATTTCACATTTACCACA
GGTTGCAGCAATGGCGGATACACATGTAAGAATTGAGAAGAATATCAATAATCAGCGTACCTCAACAGTTGTTACTGAAC
TATCTGAAGAGGATAAAGCAGATGAGCTATCTCGAATGATAACTGGTGCAGAATTAACTAATACAACACTTGAACATGCA
AGAGAGTTGCTGAAGTTGGCATCGAAACATAAACAAAAGGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.704

100

0.547