Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN89_RS01280 Genome accession   NZ_CP095073
Coordinates   223255..224628 (-) Length   457 a.a.
NCBI ID   WP_244710766.1    Uniprot ID   -
Organism   Halobacillus salinarum strain SSBR10-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 218255..229628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN89_RS01265 (MUN89_01265) - 219641..220849 (-) 1209 WP_318036112.1 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUN89_RS01270 (MUN89_01270) - 220918..222024 (-) 1107 WP_244710762.1 PIN/TRAM domain-containing protein -
  MUN89_RS01275 (MUN89_01275) disA 222181..223254 (-) 1074 WP_244710764.1 DNA integrity scanning diadenylate cyclase DisA -
  MUN89_RS01280 (MUN89_01280) radA 223255..224628 (-) 1374 WP_244710766.1 DNA repair protein RadA Machinery gene
  MUN89_RS01285 (MUN89_01285) clpC 224862..227333 (-) 2472 WP_244710767.1 ATP-dependent protease ATP-binding subunit ClpC -
  MUN89_RS01290 (MUN89_01290) - 227352..228422 (-) 1071 WP_244710769.1 protein arginine kinase -
  MUN89_RS01295 (MUN89_01295) - 228425..228970 (-) 546 WP_244710771.1 UvrB/UvrC motif-containing protein -
  MUN89_RS01300 (MUN89_01300) - 228991..229455 (-) 465 WP_244710772.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49989.47 Da        Isoelectric Point: 7.1874

>NTDB_id=674948 MUN89_RS01280 WP_244710766.1 223255..224628(-) (radA) [Halobacillus salinarum strain SSBR10-3]
MAKRKTKFVCQECGYETPKWMGKCPGCHQWNTLVEEMSAPAVSRHVFQTNSSTQAKPEKINSIQSQKEPRLPTDMPELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSAQIANKQLPVLYISGEESSRQTKLRAERLNITSEELYVLSETNLQDVITQ
IDSINPSFVVIDSIQTIFKEDVTSAPGSVSQVRECTSQLMRIAKSKGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFEG
ERHHTFRILRSVKNRFGSTHEMGIFEMKEKGLEEVLNPSEIFLEERSQGAAGSIVVASMEGTRPVLVEIQALISPTAFGN
PRRMATGLDHNRVPLLMAVLEKRAGLLLQNQDAYVKVAGGVKLDEPAVDLAVAISIASSFRDQASNPHDVVVGEVGLTGE
VRRVARIEQRVQEAAKLGFKRVIIPNKNLDGWTPPSSIEVIGVNTVQEAMNLTLGDR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=674948 MUN89_RS01280 WP_244710766.1 223255..224628(-) (radA) [Halobacillus salinarum strain SSBR10-3]
TTGGCAAAGAGAAAAACAAAATTTGTTTGCCAGGAATGTGGTTATGAAACACCTAAATGGATGGGGAAATGTCCTGGATG
TCATCAATGGAATACGCTGGTCGAAGAAATGAGCGCACCGGCTGTATCCAGGCATGTGTTTCAAACAAATTCCTCAACTC
AAGCAAAGCCGGAAAAAATTAATTCAATCCAATCGCAGAAAGAACCGCGTCTCCCGACAGATATGCCTGAATTAAACCGG
GTACTCGGAGGCGGAATTGTGGCAGGCTCCTTAGTGTTAATAGGCGGGGACCCTGGTATTGGAAAGTCGACCTTACTCCT
TCAGGTTTCCGCGCAAATTGCCAACAAACAATTGCCGGTGCTTTATATTTCCGGTGAGGAATCTTCAAGACAGACCAAGC
TCCGAGCAGAGAGGCTCAACATTACCTCTGAAGAACTGTATGTATTATCAGAAACAAATTTACAAGATGTCATTACCCAG
ATCGATTCGATCAATCCAAGCTTTGTGGTGATTGATTCGATTCAAACGATTTTTAAAGAGGACGTCACCTCTGCACCTGG
AAGTGTCTCCCAAGTAAGGGAATGTACAAGCCAGCTGATGAGAATCGCTAAGAGTAAAGGTATTCCGATTTTCATTGTGG
GGCATGTTACAAAAGAAGGGTCCATTGCAGGACCGCGGCTGCTTGAACATATGGTCGATGCGGTACTTTATTTTGAAGGG
GAGCGCCACCACACCTTCCGGATATTAAGAAGTGTGAAGAACCGTTTTGGCAGCACTCATGAGATGGGAATTTTTGAAAT
GAAGGAAAAAGGGCTGGAAGAAGTTCTCAATCCTTCAGAAATCTTTTTGGAAGAGCGTTCCCAAGGAGCAGCAGGTTCAA
TTGTTGTGGCTTCCATGGAAGGTACTCGACCAGTCCTGGTAGAAATACAGGCGCTTATTTCCCCGACGGCATTTGGGAAT
CCGCGACGAATGGCCACCGGTTTGGATCATAACCGGGTCCCGCTGTTAATGGCCGTTTTAGAAAAACGTGCGGGTTTGCT
TTTGCAAAATCAAGACGCCTATGTGAAGGTTGCCGGCGGGGTGAAGCTTGACGAACCTGCCGTAGATCTTGCCGTGGCGA
TTAGTATCGCTTCCAGCTTCCGTGACCAGGCATCCAATCCACATGATGTCGTTGTAGGAGAAGTGGGATTGACAGGAGAG
GTCAGAAGAGTCGCGAGAATTGAACAGCGTGTCCAGGAAGCAGCTAAACTTGGGTTCAAAAGGGTAATCATCCCCAATAA
GAATTTAGACGGCTGGACCCCTCCTTCTTCCATCGAGGTCATAGGGGTTAACACCGTTCAGGAAGCCATGAACTTAACGT
TGGGAGATAGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.617

100

0.746
  radA Streptococcus mitis NCTC 12261

62.222

98.468

0.613
  radA Streptococcus mitis SK321

62

98.468

0.611
  radA Streptococcus pneumoniae Rx1

61.778

98.468

0.608
  radA Streptococcus pneumoniae D39

61.778

98.468

0.608
  radA Streptococcus pneumoniae R6

61.778

98.468

0.608
  radA Streptococcus pneumoniae TIGR4

61.778

98.468

0.608