Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ECO25NV_RS03790 Genome accession   NZ_AP022326
Coordinates   787258..788460 (-) Length   400 a.a.
NCBI ID   WP_001554267.1    Uniprot ID   -
Organism   Escherichia coli O25:H4 strain 18044     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 782258..793460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO25NV_RS03780 (ECO25NV_07500) - 785443..786108 (-) 666 WP_001554269.1 ABC transporter ATP-binding protein -
  ECO25NV_RS03785 (ECO25NV_07510) - 786105..786881 (-) 777 WP_001533607.1 ABC transporter permease -
  ECO25NV_RS03790 (ECO25NV_07520) kpsS 787258..788460 (-) 1203 WP_001554267.1 capsular biosynthesis protein Regulator
  ECO25NV_RS03795 (ECO25NV_07530) - 788495..790522 (-) 2028 WP_001554266.1 capsular polysaccharide biosynthesis protein -
  ECO25NV_RS03800 (ECO25NV_07540) kdsB 790519..791259 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ECO25NV_RS03805 (ECO25NV_07550) - 791269..792945 (-) 1677 WP_001554264.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 47528.92 Da        Isoelectric Point: 10.1180

>NTDB_id=67494 ECO25NV_RS03790 WP_001554267.1 787258..788460(-) (kpsS) [Escherichia coli O25:H4 strain 18044]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGEGFKSRKCA

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=67494 ECO25NV_RS03790 WP_001554267.1 787258..788460(-) (kpsS) [Escherichia coli O25:H4 strain 18044]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGGGGAGGGTTTTAAAAGTAGAAAATGTGCG
TAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.25

0.388

Multiple sequence alignment