Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUN88_RS15700 Genome accession   NZ_CP095072
Coordinates   3309185..3310903 (+) Length   572 a.a.
NCBI ID   WP_244716698.1    Uniprot ID   -
Organism   Gracilibacillus caseinilyticus strain SSWR10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3304185..3315903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN88_RS15680 (MUN88_15680) - 3305317..3305892 (+) 576 WP_244716691.1 hypothetical protein -
  MUN88_RS15685 (MUN88_15685) dxs 3305928..3307826 (+) 1899 WP_244716692.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MUN88_RS15690 (MUN88_15690) - 3307832..3308650 (+) 819 WP_244716694.1 TlyA family RNA methyltransferase -
  MUN88_RS15695 (MUN88_15695) ahrC 3308717..3309166 (+) 450 WP_244716696.1 transcriptional regulator AhrC/ArgR -
  MUN88_RS15700 (MUN88_15700) recN 3309185..3310903 (+) 1719 WP_244716698.1 DNA repair protein RecN Machinery gene
  MUN88_RS15705 (MUN88_15705) spoIVB 3311041..3312327 (+) 1287 WP_244716700.1 SpoIVB peptidase -
  MUN88_RS15710 (MUN88_15710) spo0A 3312560..3313339 (+) 780 WP_244716702.1 sporulation transcription factor Spo0A -
  MUN88_RS15715 (MUN88_15715) - 3313383..3314483 (-) 1101 WP_244716704.1 mechanosensitive ion channel family protein -
  MUN88_RS15720 (MUN88_15720) safA 3314666..3315216 (+) 551 Protein_3078 SafA/ExsA family spore coat assembly protein -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 65543.17 Da        Isoelectric Point: 5.9275

>NTDB_id=674937 MUN88_RS15700 WP_244716698.1 3309185..3310903(+) (recN) [Gracilibacillus caseinilyticus strain SSWR10-1]
MLTELSIKNFAIIEQLSISFQSGLTVLTGETGAGKSIIIDALGLLIGGRGSVEYVRHGEKKAELEGLFIIEDRRHPVYQK
TKELGIDINEDQMLVIHRTISHSGKSICRINGKLTTLAILKEIGQSVLDIHSQHETQALLNKEKHLELLDFFHQSSHPDF
KKSYQHLYNHWKQLKDKYEASNKNEQELAQRMDLLDFQLKEIQNADLQPDEDQLLTEERNELQHFEKIHSNLNDAYNALH
GEQRGLDWMSHAANHLEEAGEHHQAVKKMHQDYIDHYYLMEEISYQIRQQLESMDYEPGRLEVIESRLHEIDQLKRKYGQ
SVEEIMTYSAKIEEELDEITHRDQHLENLSNMLQEAAHDLLLEAKELYLLRKKAAKQLEKAVLAELKDLYMDKTAFEVDI
SIPSRENGISFEGKKVTPHPHGIDQARFLISTNPGEPVKDLDRIASGGEMSRIMLALKNIFSKHQGITSVIFDEVDTGVS
GRVAQSMAEKIHNISSGSQVLCITHLPQVASIADTHLRIEKIVENNRTHTTLQELSFEQRIDEIGKMITGEELTTASKTH
ARELIEMNHKHK

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=674937 MUN88_RS15700 WP_244716698.1 3309185..3310903(+) (recN) [Gracilibacillus caseinilyticus strain SSWR10-1]
ATGTTAACGGAATTATCGATAAAAAATTTTGCGATAATAGAGCAATTATCCATATCGTTTCAATCTGGATTGACAGTTTT
AACCGGAGAGACTGGTGCTGGTAAATCCATTATTATTGATGCGCTTGGTTTACTGATTGGTGGAAGAGGATCGGTTGAAT
ATGTACGTCATGGTGAGAAAAAAGCAGAATTAGAAGGGCTTTTTATTATAGAAGACCGTAGACACCCTGTTTACCAGAAA
ACAAAAGAATTAGGAATTGATATCAATGAGGACCAAATGCTTGTTATTCATCGAACTATTTCTCATTCAGGCAAGAGCAT
ATGCCGTATCAACGGTAAACTAACGACATTAGCCATTTTAAAAGAGATAGGACAAAGTGTTCTTGATATCCATAGTCAGC
ATGAAACACAGGCATTATTAAATAAAGAGAAGCACTTGGAACTGTTAGACTTTTTTCATCAATCGAGTCATCCAGATTTC
AAAAAATCCTATCAACACCTGTATAATCATTGGAAACAGCTGAAAGATAAGTATGAGGCAAGTAACAAAAATGAACAAGA
ATTGGCTCAGCGTATGGATTTATTGGATTTTCAATTAAAAGAAATCCAAAATGCTGATTTGCAGCCAGATGAAGATCAAC
TTCTGACAGAAGAACGAAATGAATTACAGCATTTTGAGAAAATCCACAGCAATTTAAATGATGCGTATAATGCTCTTCAT
GGAGAACAACGCGGTCTGGATTGGATGTCACATGCAGCCAATCATCTTGAGGAAGCTGGAGAACATCATCAAGCCGTTAA
AAAAATGCATCAAGATTATATTGATCATTATTATTTAATGGAAGAGATCTCATACCAAATACGGCAACAACTTGAAAGTA
TGGATTATGAACCAGGTCGCTTAGAAGTGATTGAATCCCGTTTACATGAAATCGATCAGCTGAAGCGTAAATATGGGCAA
TCAGTGGAAGAAATTATGACGTACAGCGCAAAAATTGAAGAAGAATTGGATGAGATCACACATCGGGATCAGCATCTTGA
GAATCTTTCTAATATGTTACAGGAAGCAGCTCATGATTTATTACTAGAGGCAAAAGAATTGTATCTGCTGAGAAAAAAAG
CAGCTAAACAGTTAGAAAAAGCAGTTTTAGCGGAACTAAAGGATTTATATATGGATAAAACTGCGTTTGAAGTAGATATC
TCTATACCTAGTCGTGAAAATGGTATTTCATTCGAAGGCAAAAAAGTTACGCCACATCCCCATGGGATCGACCAGGCAAG
ATTTTTAATTTCTACGAATCCAGGAGAACCTGTCAAGGATTTAGACCGTATTGCATCAGGTGGGGAAATGTCTCGGATCA
TGCTTGCTTTAAAAAATATTTTCTCAAAGCACCAAGGCATTACGAGTGTTATTTTTGACGAAGTTGATACCGGTGTAAGT
GGCCGTGTTGCGCAATCAATGGCTGAGAAAATTCATAACATATCCAGTGGTTCCCAAGTACTTTGTATCACCCATTTACC
TCAGGTTGCCTCAATTGCCGATACGCATTTAAGAATAGAAAAGATTGTAGAAAATAATCGTACCCATACAACATTGCAAG
AACTAAGCTTTGAACAACGAATAGATGAAATAGGTAAAATGATAACCGGAGAAGAATTAACAACTGCATCCAAAACACAT
GCACGCGAACTTATCGAGATGAATCACAAACATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.817

99.301

0.524