Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN88_RS05090 Genome accession   NZ_CP095072
Coordinates   1031713..1033083 (-) Length   456 a.a.
NCBI ID   WP_244721689.1    Uniprot ID   -
Organism   Gracilibacillus caseinilyticus strain SSWR10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1026713..1038083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN88_RS05070 (MUN88_05070) gltX 1027611..1029077 (-) 1467 WP_244721679.1 glutamate--tRNA ligase -
  MUN88_RS05075 (MUN88_05075) ispF 1029227..1029703 (-) 477 WP_244721682.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUN88_RS05080 (MUN88_05080) ispD 1029703..1030395 (-) 693 WP_244724333.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUN88_RS05085 (MUN88_05085) - 1030501..1031604 (-) 1104 WP_244721685.1 PIN/TRAM domain-containing protein -
  MUN88_RS05090 (MUN88_05090) radA 1031713..1033083 (-) 1371 WP_244721689.1 DNA repair protein RadA Machinery gene
  MUN88_RS05095 (MUN88_05095) clpC 1033457..1035883 (-) 2427 WP_244721692.1 ATP-dependent protease ATP-binding subunit ClpC -
  MUN88_RS05100 (MUN88_05100) - 1035885..1036961 (-) 1077 WP_244721695.1 protein arginine kinase -
  MUN88_RS05105 (MUN88_05105) - 1036958..1037500 (-) 543 WP_244721697.1 UvrB/UvrC motif-containing protein -
  MUN88_RS05110 (MUN88_05110) - 1037513..1037977 (-) 465 WP_244721699.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49944.36 Da        Isoelectric Point: 6.5938

>NTDB_id=674911 MUN88_RS05090 WP_244721689.1 1031713..1033083(-) (radA) [Gracilibacillus caseinilyticus strain SSWR10-1]
MAKRKSKFVCQSCGYESPKWMGKCPGCHQWNTLVEELEATKTARGNWATGAATAQKPEKISSIQTQEEPRITTSMRELNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSSQLSQSNLDVLYISGEESARQTKLRADRLDISSERLYVLSETNLMDIANQ
IDQLKPGFVVIDSIQTIFKEEVTSAPGSVSQVRECTSELMRIAKQNHIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFEG
ERHHTFRILRSVKNRFGSTHEMGIFEMKEEGLVEVLNPSEIFLEERSQGVAGSTIVASMEGTRPVLVEIQALISPTSFGN
PRRMATGIDHNRVPLLMAVLEKRVGLMLQNQDAYVKVAGGVKLDEPAIDLAVAISIASSFRDRAPHTDDVLIGEVGLTGE
IRRVSRIDQRVQEAAKLGFKRAIIPAKNLEGWTPPDSIEMVGVNSVQEAIKIALGD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=674911 MUN88_RS05090 WP_244721689.1 1031713..1033083(-) (radA) [Gracilibacillus caseinilyticus strain SSWR10-1]
TTGGCTAAGCGTAAATCAAAATTTGTTTGTCAATCTTGTGGATATGAATCACCAAAATGGATGGGTAAATGCCCAGGATG
CCATCAGTGGAATACGTTGGTAGAAGAATTAGAAGCAACAAAGACAGCAAGAGGAAATTGGGCAACGGGGGCAGCAACAG
CTCAAAAGCCGGAAAAAATTTCGAGTATTCAAACACAAGAAGAGCCTAGAATTACAACAAGCATGCGAGAATTAAACCGT
GTTTTAGGAGGCGGGATTGTACCAGGGTCGCTTGTACTGATTGGCGGAGATCCAGGGATAGGGAAATCCACCTTGCTCCT
GCAAGTATCGAGTCAGCTATCGCAAAGTAATTTAGACGTATTGTACATTTCCGGAGAAGAATCTGCTCGACAGACTAAGT
TGAGAGCAGACCGCCTCGATATTTCCTCTGAACGACTATATGTGCTGTCAGAAACAAACTTAATGGATATTGCTAATCAA
ATTGATCAACTAAAACCAGGATTTGTTGTTATCGACTCGATTCAAACCATTTTTAAAGAAGAAGTTACTAGTGCTCCAGG
TAGCGTATCGCAAGTTCGCGAATGTACAAGCGAATTAATGCGAATTGCCAAACAGAACCACATTCCTATTTTTATTGTGG
GGCATGTTACAAAAGAAGGTTCAATTGCTGGACCTAGGTTGCTCGAACACATGGTAGATGCTGTTTTATATTTTGAAGGG
GAAAGGCATCATACTTTCAGAATATTACGAAGCGTGAAGAATCGATTCGGCAGTACGCATGAAATGGGTATTTTTGAAAT
GAAAGAAGAAGGTCTTGTCGAAGTGTTAAACCCATCCGAAATCTTTTTGGAAGAACGTTCTCAGGGAGTTGCAGGCTCTA
CAATTGTTGCATCAATGGAAGGAACAAGGCCGGTATTAGTAGAAATACAAGCTTTAATTTCTCCAACAAGTTTTGGAAAC
CCGCGGAGAATGGCAACAGGTATTGATCACAATCGGGTCCCGTTGCTGATGGCGGTTCTTGAAAAAAGAGTAGGTTTAAT
GCTCCAGAATCAAGATGCCTATGTAAAGGTGGCTGGAGGAGTGAAGTTAGATGAGCCAGCTATTGATCTGGCTGTGGCCA
TTAGTATTGCTTCCAGTTTTAGAGACAGAGCGCCGCATACGGATGATGTTCTTATCGGAGAAGTCGGTTTGACAGGAGAA
ATTCGCAGAGTGTCACGCATCGATCAGCGGGTGCAGGAAGCAGCAAAATTAGGATTTAAGCGAGCAATCATTCCTGCTAA
GAATCTGGAAGGCTGGACACCACCGGATTCCATTGAAATGGTTGGTGTTAACTCTGTGCAGGAAGCCATAAAGATAGCAT
TAGGGGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(352-428)

AAA domain (AAA_25)

(63-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.492

100

0.757
  radA Streptococcus mitis NCTC 12261

62.996

99.561

0.627
  radA Streptococcus mitis SK321

62.996

99.561

0.627
  radA Streptococcus pneumoniae Rx1

62.775

99.561

0.625
  radA Streptococcus pneumoniae D39

62.775

99.561

0.625
  radA Streptococcus pneumoniae R6

62.775

99.561

0.625
  radA Streptococcus pneumoniae TIGR4

62.775

99.561

0.625