Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN87_RS14220 Genome accession   NZ_CP095071
Coordinates   3059459..3060832 (+) Length   457 a.a.
NCBI ID   WP_244741146.1    Uniprot ID   -
Organism   Gracilibacillus salinarum strain SSPM10-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3054459..3065832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN87_RS14200 (MUN87_14200) - 3054612..3055076 (+) 465 WP_244741138.1 CtsR family transcriptional regulator -
  MUN87_RS14205 (MUN87_14205) - 3055089..3055631 (+) 543 WP_244741140.1 UvrB/UvrC motif-containing protein -
  MUN87_RS14210 (MUN87_14210) - 3055628..3056704 (+) 1077 WP_244741142.1 protein arginine kinase -
  MUN87_RS14215 (MUN87_14215) clpC 3056706..3059132 (+) 2427 WP_244741144.1 ATP-dependent protease ATP-binding subunit ClpC -
  MUN87_RS14220 (MUN87_14220) radA 3059459..3060832 (+) 1374 WP_244741146.1 DNA repair protein RadA Machinery gene
  MUN87_RS14225 (MUN87_14225) - 3060941..3062044 (+) 1104 WP_244741148.1 PIN/TRAM domain-containing protein -
  MUN87_RS14230 (MUN87_14230) ispD 3062150..3062842 (+) 693 WP_244747971.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUN87_RS14235 (MUN87_14235) ispF 3062842..3063318 (+) 477 WP_244741150.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUN87_RS14240 (MUN87_14240) gltX 3063470..3064936 (+) 1467 WP_244741152.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50017.41 Da        Isoelectric Point: 6.7695

>NTDB_id=674903 MUN87_RS14220 WP_244741146.1 3059459..3060832(+) (radA) [Gracilibacillus salinarum strain SSPM10-3]
MAKRKSKFVCQSCGYESPKWMGKCPGCHQWNTLVEELEATKTARGNWATGGSATAQKPEKISSIQSQEEPRISTSMRELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSSQLSQSNLDVLYISGEESARQTKLRADRLDISSERLYVLSETNLMDIAN
QIDQLKPGFVVIDSIQTIFKEEVTSAPGSVSQVRECTSELMRIAKRNHIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTFRILRSVKNRFGSTHEMGIFEMKEEGLVEVLNPSEIFLEERSQGVAGSTIVASMEGTRPVLVEIQALISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLMLQNQDAYVKVAGGVKLDEPAIDLAVAISIASSFRDRAPHTDDVLIGEVGLTG
EVRRVSRIDQRVQEAAKLGFKRAIIPAKNLEGWTPPDTIEMVGVNSVQEAIKIALGD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=674903 MUN87_RS14220 WP_244741146.1 3059459..3060832(+) (radA) [Gracilibacillus salinarum strain SSPM10-3]
TTGGCTAAACGTAAATCAAAATTTGTTTGTCAATCTTGTGGATATGAATCACCAAAATGGATGGGGAAATGTCCAGGATG
TCATCAGTGGAATACATTAGTAGAGGAATTAGAAGCAACGAAGACAGCAAGAGGAAATTGGGCAACAGGTGGTTCAGCAA
CAGCTCAAAAGCCGGAAAAAATTTCGAGTATTCAATCACAAGAAGAACCTAGAATTTCGACAAGCATGCGAGAATTAAAC
CGTGTTTTAGGCGGTGGGATTGTTCCAGGGTCACTTGTGTTGATTGGCGGTGATCCGGGTATCGGAAAATCAACTTTGCT
TCTGCAAGTATCCAGTCAGCTATCGCAAAGCAACCTAGACGTATTGTACATTTCTGGAGAAGAATCTGCTCGACAGACAA
AGTTAAGAGCAGATCGCCTCGATATTTCCTCTGAACGACTATATGTGCTGTCAGAAACAAATTTAATGGATATTGCTAAT
CAAATTGATCAATTGAAACCAGGATTTGTTGTTATTGACTCGATTCAAACCATTTTTAAAGAAGAAGTGACTAGTGCACC
AGGTAGTGTATCACAAGTTCGCGAATGTACAAGCGAATTAATGCGAATTGCCAAGCGGAACCACATCCCGATTTTTATTG
TAGGGCATGTCACAAAAGAAGGTTCCATTGCTGGGCCAAGGTTACTCGAACACATGGTAGATGCAGTTTTGTATTTTGAA
GGGGAAAGACACCATACTTTCCGCATATTACGAAGTGTGAAGAATAGATTTGGCAGTACACATGAAATGGGTATCTTTGA
AATGAAAGAAGAAGGTCTCGTTGAAGTGTTAAACCCGTCTGAGATCTTCTTGGAAGAACGTTCGCAAGGGGTAGCAGGTT
CTACTATTGTTGCATCAATGGAGGGAACCAGACCAGTATTAGTAGAAATACAAGCTTTAATTTCTCCTACAAGCTTTGGA
AATCCGAGAAGAATGGCTACCGGGATTGATCATAACAGGGTGCCGTTGCTGATGGCGGTTCTTGAAAAAAGAGTAGGTTT
AATGCTCCAGAATCAAGATGCGTATGTGAAGGTCGCCGGAGGAGTAAAGTTAGATGAGCCGGCAATTGATCTGGCCGTTG
CCATTAGTATTGCTTCCAGCTTTAGAGACAGAGCGCCGCATACAGATGATGTTCTGATTGGAGAAGTTGGATTGACAGGA
GAGGTTCGGAGAGTGTCCCGAATTGATCAGCGGGTGCAGGAAGCTGCAAAGTTAGGCTTTAAGCGAGCTATTATTCCTGC
TAAGAATCTGGAAGGCTGGACACCTCCAGACACCATTGAAATGGTTGGTGTTAATTCCGTACAGGAAGCCATAAAGATAG
CATTAGGAGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.711

100

0.757
  radA Streptococcus mitis NCTC 12261

62.252

99.125

0.617
  radA Streptococcus mitis SK321

62.252

99.125

0.617
  radA Streptococcus pneumoniae Rx1

62.031

99.125

0.615
  radA Streptococcus pneumoniae D39

62.031

99.125

0.615
  radA Streptococcus pneumoniae R6

62.031

99.125

0.615
  radA Streptococcus pneumoniae TIGR4

62.031

99.125

0.615