Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB33_RS12950 Genome accession   NZ_CP109365
Coordinates   2980406..2981182 (+) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01558     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2975406..2986182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB33_RS12935 (OHB33_12925) - 2975575..2976108 (+) 534 WP_326842203.1 TerD family protein -
  OHB33_RS12940 (OHB33_12930) - 2976275..2979172 (-) 2898 WP_326842204.1 vitamin B12-dependent ribonucleotide reductase -
  OHB33_RS12945 (OHB33_12935) nrdR 2979335..2979886 (-) 552 WP_164375222.1 transcriptional regulator NrdR -
  OHB33_RS12950 (OHB33_12940) dinR/lexA 2980406..2981182 (+) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OHB33_RS12955 (OHB33_12945) - 2981406..2983472 (-) 2067 WP_239155826.1 ATP-dependent DNA helicase -
  OHB33_RS12960 (OHB33_12950) - 2983663..2984547 (-) 885 WP_326842205.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=674878 OHB33_RS12950 WP_081219793.1 2980406..2981182(+) (dinR/lexA) [Streptomyces sp. NBC_01558]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=674878 OHB33_RS12950 WP_081219793.1 2980406..2981182(+) (dinR/lexA) [Streptomyces sp. NBC_01558]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGGCGACCTCCAGGTATCCGAGCCGACAGCTCGGGACTCA
CGGACCGGCAACGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGACAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGTTTCCTTCGCCG
GGACCCGCACCGCCCGCGCGCCTACGAAGTGCGGGGCTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTACCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTG
TTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTCGATGATCGAAGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAGGCTACGGTGAAGCGCTTCAAGCGGGAGGACGGCCACGTCTGGCTGCTGCCGCACAACTCCGCCTACCAGCCGATC
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372