Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN86_RS22620 Genome accession   NZ_CP095061
Coordinates   5158272..5159657 (-) Length   461 a.a.
NCBI ID   WP_245120227.1    Uniprot ID   -
Organism   Hymenobacter volaticus strain 5420 S-77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5153272..5164657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN86_RS22600 (MUN86_22585) - 5153690..5154796 (+) 1107 Protein_4557 erythromycin esterase family protein -
  MUN86_RS22605 (MUN86_22590) - 5154973..5155995 (-) 1023 WP_245120224.1 SPASM domain-containing protein -
  MUN86_RS22610 (MUN86_22595) - 5156169..5156531 (+) 363 WP_245120225.1 hypothetical protein -
  MUN86_RS22615 (MUN86_22600) - 5156607..5158079 (-) 1473 WP_245120226.1 redoxin domain-containing protein -
  MUN86_RS22620 (MUN86_22605) radA 5158272..5159657 (-) 1386 WP_245120227.1 DNA repair protein RadA Machinery gene
  MUN86_RS22625 (MUN86_22610) - 5160258..5161655 (+) 1398 WP_245120228.1 sensor histidine kinase -
  MUN86_RS22630 (MUN86_22615) - 5161908..5163563 (+) 1656 WP_245120229.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50085.47 Da        Isoelectric Point: 5.7725

>NTDB_id=674872 MUN86_RS22620 WP_245120227.1 5158272..5159657(-) (radA) [Hymenobacter volaticus strain 5420 S-77]
MAKLKTLYFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIQKEETTAANAWKASTSVGGTSKAAKPRVISDILFEEEPRMLT
QDGELDRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMTLRQLKVLYVSGEESEQQIKMRAERLGEQHPGCYILTETNTQ
NIFKQIDQLQPNVVIVDSIQTLHSGLVESGAGSVSQVRECTQELLKYAKETGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTIKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRTESLSGMAIGATLEGNRPLLVEVQALVTP
ATYGTPQRSSTGFDAKRLNMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDLPIRGEICLAAEV
GLSGEIRAVSRLDQRLSEAEKLGFAEMYISQFNARGLDLSRYGIRVQPASRLDAVLEGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=674872 MUN86_RS22620 WP_245120227.1 5158272..5159657(-) (radA) [Hymenobacter volaticus strain 5420 S-77]
ATGGCCAAGCTTAAGACCTTATACTTCTGCCAAAACTGCGGTGCTCAATCAGCGAAATGGATTGGCCGCTGCCCTAGCTG
CGGCGAATGGAACACCTACGTCGAAGAAGTTATCCAGAAAGAAGAAACCACGGCGGCCAATGCCTGGAAAGCCAGCACCA
GCGTGGGCGGCACCAGCAAAGCCGCCAAGCCCCGCGTCATTTCCGACATTCTATTTGAAGAAGAGCCCCGCATGCTTACC
CAAGACGGTGAGCTAGATCGGGTGCTCGGCGGCGGACTAGTACCTGGTTCGCTGGTTCTGATTGGTGGCGAACCGGGCAT
TGGCAAAAGCACGCTCATGTTGCAGATTGCCATGACCTTGCGTCAACTCAAGGTGCTCTACGTGTCGGGCGAGGAAAGTG
AGCAGCAAATCAAGATGCGGGCCGAGCGGCTCGGTGAGCAACACCCCGGCTGCTATATCCTCACCGAAACCAACACCCAG
AACATCTTCAAGCAAATCGACCAACTTCAGCCCAACGTGGTCATCGTCGATTCCATTCAGACGCTGCACTCTGGGCTAGT
AGAAAGTGGCGCGGGCTCGGTGAGCCAAGTGCGCGAATGCACGCAGGAGTTGCTGAAGTACGCCAAGGAAACTGGTGTGC
CAGTGCTGCTCATCGGCCATATCACCAAAGACGGTTCTATTGCGGGCCCCAAAATTCTGGAGCACATGGTGGACACCGTG
TTGCAGTTCGAGGGCGACCGGCACCTGAGCTACCGTATTCTGCGCACTATCAAAAACCGCTTCGGCTCCACCTCGGAGCT
GGGTATCTACGAGATGCAAGGCACTGGTCTGCGGCAGGTCAGCAACCCGAGCGAAATTCTACTCAGCCAGCGCACCGAGA
GCTTGAGTGGCATGGCCATTGGGGCCACGCTGGAAGGCAACCGCCCGCTGTTGGTGGAAGTGCAGGCACTCGTGACGCCC
GCCACCTACGGCACCCCGCAGCGGAGCTCCACCGGCTTCGATGCTAAGCGCTTGAACATGTTGCTCGCCGTGCTCGAAAA
GCGTAGCGGTTTGCGCCTTGGTCAGCACGACGTGTTCCTGAACATTGCTGGCGGTTTGCGCCTCGACGACCCTGCCCTCG
ACTTGGCAGTATGCGCGGCCGTTGTAAGTAGCCTCAACGATTTGCCAATTCGCGGCGAAATATGTTTGGCTGCCGAAGTG
GGACTAAGTGGCGAAATCCGGGCGGTAAGCCGGCTCGACCAACGATTGAGCGAAGCCGAAAAACTTGGCTTCGCCGAAAT
GTACATTTCCCAATTTAATGCTCGGGGCCTAGATCTATCTCGTTATGGGATTCGAGTGCAACCCGCTAGCCGCCTTGATG
CAGTATTAGAGGGTTTGTTTGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.74

95.011

0.501
  radA Streptococcus pneumoniae Rx1

49.134

100

0.492
  radA Streptococcus pneumoniae D39

49.134

100

0.492
  radA Streptococcus pneumoniae R6

49.134

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.134

100

0.492
  radA Streptococcus mitis NCTC 12261

48.918

100

0.49
  radA Streptococcus mitis SK321

48.918

100

0.49