Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB33_RS06550 Genome accession   NZ_CP109365
Coordinates   1483975..1484991 (-) Length   338 a.a.
NCBI ID   WP_326841682.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01558     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478975..1489991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB33_RS06535 (OHB33_06525) - 1479939..1480715 (-) 777 WP_266850582.1 ATP-binding cassette domain-containing protein -
  OHB33_RS06540 (OHB33_06530) - 1480842..1481939 (-) 1098 WP_266850583.1 substrate-binding domain-containing protein -
  OHB33_RS06545 (OHB33_06535) - 1482639..1483643 (-) 1005 WP_326841681.1 TDT family transporter -
  OHB33_RS06550 (OHB33_06540) cytR 1483975..1484991 (-) 1017 WP_326841682.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB33_RS06555 (OHB33_06545) - 1485277..1486590 (+) 1314 WP_164372322.1 extracellular solute-binding protein -
  OHB33_RS06560 (OHB33_06550) - 1486753..1487700 (+) 948 WP_266852237.1 sugar ABC transporter permease -
  OHB33_RS06565 (OHB33_06555) - 1487714..1488655 (+) 942 WP_326841683.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36107.87 Da        Isoelectric Point: 5.4688

>NTDB_id=674868 OHB33_RS06550 WP_326841682.1 1483975..1484991(-) (cytR) [Streptomyces sp. NBC_01558]
MGGRQRPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPEE
SLSHVHSDNAGGAAAAVEHLLGRGRRTIGTISGPLDMDVARSRLQGWRETLEKAGREVPEGLVASSDFTEEGGGAAMRSL
LEQVPALDAVFVASDVMAAGALAELRRQGRRVPDDVAVVGFDDSIIARHTHPPLTSVRQPVEEIGSTIARILLAEIDDPE
EPRRHIVLPTELVLRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=674868 OHB33_RS06550 WP_326841682.1 1483975..1484991(-) (cytR) [Streptomyces sp. NBC_01558]
ATGGGGGGCAGGCAACGCCCGACCATCAAGACCGTGGCCGCCCGCGCCGGCGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAACTCGTCAGCGAGAAGGCGAGGGCCGCCGTGCTCGCCGCCATCGCCGAACTGAATTACGTCCCGAACT
CGGTCGCCCGGGGACTGGTGACGAGCCGGACCAACTCCGTTGCCCTGGTCATTCCCGAGTCGGAGAGCCGACTGGGCTCC
GAGCCCTACTTCTCGGCAGTCATCCGCGGGGTCAGCACCGCGCTGGCGGAGACCCGGACGCAACTGCAACTCGTCCTCGT
ACGCGATCAGGCCGAACGGGACCAGCTCACCGAGTCGGTGGCCGAGCGACGGGTGGACGGTGTACTCCTCGTCTCGGTGC
ACGAACACGATCCGCTGCCGGGGCTGCTGGAGGACATGGGCCTGCCCACGGTGCTCGCCGGGCGCCGTTCGCCCGAGGAG
TCGCTCAGTCACGTGCACTCCGACAACGCGGGCGGAGCCGCGGCCGCCGTCGAGCACCTGCTCGGCCGGGGACGCCGGAC
GATCGGCACGATCAGCGGGCCCCTGGACATGGACGTGGCCCGTAGCCGGCTCCAGGGGTGGCGCGAAACCCTCGAGAAGG
CGGGCCGCGAGGTCCCCGAAGGGCTCGTGGCCTCCTCCGACTTCACCGAGGAGGGCGGCGGGGCCGCCATGCGCTCACTC
CTCGAACAAGTCCCCGCGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCTGCGGGTGCGCTCGCGGAGCTGCGCCG
ACAGGGGCGGCGCGTTCCCGACGACGTCGCGGTGGTCGGGTTCGACGACTCCATCATCGCCAGGCACACCCACCCGCCCC
TCACCAGCGTGCGTCAGCCGGTCGAAGAGATCGGCAGCACGATCGCCCGCATTCTGCTGGCGGAGATCGATGATCCCGAG
GAGCCTCGCCGGCACATCGTCCTTCCCACGGAGCTGGTGCTGCGGGAGTCGTCCTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.569

100

0.361