Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN84_RS11390 Genome accession   NZ_CP095058
Coordinates   2288010..2289398 (+) Length   462 a.a.
NCBI ID   WP_244694213.1    Uniprot ID   -
Organism   Hymenobacter sp. 5516J-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2283010..2294398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN84_RS11370 (MUN84_11370) - 2283634..2284461 (-) 828 WP_244694209.1 metallophosphoesterase family protein -
  MUN84_RS11375 (MUN84_11375) - 2284712..2286367 (-) 1656 WP_244694210.1 FAD-dependent oxidoreductase -
  MUN84_RS11380 (MUN84_11380) - 2286429..2286875 (-) 447 WP_244694211.1 sensor histidine kinase -
  MUN84_RS11385 (MUN84_11385) - 2286839..2287825 (-) 987 WP_244694212.1 cyclic nucleotide-binding domain-containing protein -
  MUN84_RS11390 (MUN84_11390) radA 2288010..2289398 (+) 1389 WP_244694213.1 DNA repair protein RadA Machinery gene
  MUN84_RS11395 (MUN84_11395) - 2289726..2291144 (+) 1419 WP_244694214.1 TlpA family protein disulfide reductase -
  MUN84_RS11400 (MUN84_11400) - 2291221..2291583 (-) 363 WP_244694215.1 hypothetical protein -
  MUN84_RS11405 (MUN84_11405) - 2291915..2292940 (+) 1026 WP_244694216.1 SPASM domain-containing protein -
  MUN84_RS11410 (MUN84_11410) - 2293253..2293522 (+) 270 WP_244694217.1 helix-turn-helix domain-containing protein -
  MUN84_RS11415 (MUN84_11415) - 2293516..2293920 (+) 405 WP_244694218.1 DUF4870 domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50209.57 Da        Isoelectric Point: 6.5027

>NTDB_id=674865 MUN84_RS11390 WP_244694213.1 2288010..2289398(+) (radA) [Hymenobacter sp. 5516J-16]
MAKVKTLFFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIEKADANPAANAWKASTSVGSTTKAAKPKPLGDIIYEEESRLN
THDAELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMQLRNLRILYVSGEESEQQIKMRAERLGQQHPGLYILTETNT
QNIFRQIDQLQPNVVVVDSIQTLHSTIVEAGPGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVDT
VLQFEGDRHLTYRILRTIKNRFGSTAELGIYEMQGAGLRQVSNPSEILLSQRTEQLSGIAIGATLEGNRPLLVEVQALVT
PATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDVPIRNEICLAAE
VGLSGEIRAVSRLDQRLSESEKLGFAEMYISQFNAKGLDLARYGIRVHPAGRLDEVLTGLFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=674865 MUN84_RS11390 WP_244694213.1 2288010..2289398(+) (radA) [Hymenobacter sp. 5516J-16]
ATGGCCAAAGTTAAAACCCTATTTTTCTGTCAGAACTGCGGCGCGCAATCAGCCAAGTGGATCGGGCGCTGCCCCAGCTG
CGGGGAGTGGAATACCTACGTGGAGGAAGTTATTGAAAAGGCCGACGCTAACCCGGCTGCCAACGCCTGGAAGGCCTCTA
CTTCCGTGGGCTCCACTACCAAAGCGGCCAAGCCCAAGCCCCTCGGCGACATTATTTACGAGGAAGAATCACGCCTGAAC
ACCCACGACGCGGAGCTGAACCGGGTGCTGGGCGGCGGACTAGTGCCCGGCTCCCTGGTGCTGATCGGGGGCGAACCGGG
CATCGGTAAAAGTACCCTGATGCTGCAGATTGCCATGCAGTTGCGCAACCTGCGCATCCTGTACGTATCGGGCGAGGAAA
GCGAGCAGCAAATCAAGATGCGGGCCGAACGCCTCGGGCAGCAGCACCCGGGCCTTTACATCCTCACCGAAACCAACACC
CAGAACATCTTCCGCCAGATTGACCAGCTCCAGCCCAACGTGGTGGTCGTCGATTCCATCCAGACCTTGCACAGCACCAT
TGTGGAGGCCGGGCCCGGCTCCGTGAGCCAGGTGCGCGAGTGCACCACCGAGCTACTTAAGTACGCCAAGGATACGGGTG
TGCCGGTGCTGCTCATCGGTCACATCACCAAGGATGGCTCCATTGCCGGCCCCAAAATCCTGGAGCACATGGTGGATACC
GTGCTGCAGTTTGAGGGCGACCGGCACCTGACCTACCGGATTCTGCGCACCATCAAAAACCGCTTCGGCTCCACTGCCGA
GCTGGGCATCTACGAAATGCAGGGCGCGGGGCTGCGCCAGGTAAGCAACCCCTCCGAGATTCTGCTGAGCCAGCGCACGG
AGCAGCTCAGCGGCATTGCCATTGGGGCTACTCTGGAAGGCAACCGGCCGCTGCTGGTGGAGGTGCAGGCCCTCGTGACG
CCCGCTACCTACGGCACGCCTCAGCGTTCCTCCACGGGCTTCGACAGCAAGCGCCTGCAGATGCTGCTGGCGGTACTAGA
GAAGCGTAGCGGCCTGCGCCTAGGTCAGCATGACGTGTTCCTGAACATTGCCGGCGGTCTGCGCCTCGAAGACCCCGCAT
TGGACTTAGCCGTGTGCGCGGCGGTAGTGAGTTCGCTTAATGACGTGCCCATTCGCAACGAAATTTGCCTGGCGGCGGAG
GTGGGCCTGAGCGGGGAGATTCGGGCCGTGAGCCGGCTAGATCAGCGCCTGAGTGAATCGGAAAAATTGGGCTTCGCCGA
AATGTACATTTCGCAATTCAACGCCAAAGGGCTGGACCTGGCCCGCTACGGCATTCGGGTGCACCCCGCCGGGCGCCTCG
ACGAGGTGCTGACGGGTCTTTTTGGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(75-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.724

100

0.519
  radA Streptococcus pneumoniae Rx1

49.134

100

0.491
  radA Streptococcus pneumoniae D39

49.134

100

0.491
  radA Streptococcus pneumoniae R6

49.134

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.134

100

0.491
  radA Streptococcus mitis NCTC 12261

48.918

100

0.489
  radA Streptococcus mitis SK321

48.812

100

0.489