Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN83_RS17760 Genome accession   NZ_CP095056
Coordinates   4131958..4133349 (-) Length   463 a.a.
NCBI ID   WP_171590884.1    Uniprot ID   -
Organism   Hymenobacter sp. 5414T-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4126958..4138349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN83_RS17740 (MUN83_17740) - 4127707..4128330 (-) 624 WP_171590880.1 helix-turn-helix domain-containing protein -
  MUN83_RS17745 (MUN83_17745) - 4128472..4129494 (-) 1023 WP_171590881.1 SPASM domain-containing protein -
  MUN83_RS17750 (MUN83_17750) - 4129700..4130062 (+) 363 WP_171590882.1 hypothetical protein -
  MUN83_RS17755 (MUN83_17755) - 4130145..4131608 (-) 1464 WP_171590883.1 TlpA family protein disulfide reductase -
  MUN83_RS17760 (MUN83_17760) radA 4131958..4133349 (-) 1392 WP_171590884.1 DNA repair protein RadA Machinery gene
  MUN83_RS17765 (MUN83_17765) - 4133826..4135196 (+) 1371 WP_171590885.1 hypothetical protein -
  MUN83_RS17770 (MUN83_17770) - 4135397..4135918 (+) 522 WP_171590886.1 phage tail protein -
  MUN83_RS17775 (MUN83_17775) - 4135935..4137362 (+) 1428 WP_171590887.1 T9SS type A sorting domain-containing protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50038.32 Da        Isoelectric Point: 6.4180

>NTDB_id=674860 MUN83_RS17760 WP_171590884.1 4131958..4133349(-) (radA) [Hymenobacter sp. 5414T-23]
MAKIKTLYFCQNCGAQSAKWIGRCPSCGEWNTYVEEVIEKPDTATAAGAWKASTSVGSTTTKAAKPKPLGDILYEEESRL
NTHDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMHMGNLRILYVSGEESEQQIKMRAERLGKQHPNLYILTETG
TQNIFRQIDQLQPNVVIIDSIQTLHSSLVEAGAGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVD
TVLQFEGDRHLSYRLLRTVKNRFGSTSELGIYEMQGSGLRQVSNPSEILLSQRTESLSGMAIGATLEGNRPLLVEVQALV
TPATYGTPQRSSTGFDAKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDVPIAGEVCLAA
EVGLSGEIRAVSRLDQRLSEAEKLGFAEMYISQFNARGLDIARYGIRVHPSGRLDEVLNGLFG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=674860 MUN83_RS17760 WP_171590884.1 4131958..4133349(-) (radA) [Hymenobacter sp. 5414T-23]
ATGGCCAAAATCAAGACCCTATATTTTTGTCAGAATTGCGGTGCCCAATCTGCTAAGTGGATTGGCCGCTGCCCCTCCTG
CGGCGAGTGGAACACCTATGTAGAAGAGGTAATTGAAAAGCCCGACACGGCCACGGCGGCCGGGGCCTGGAAGGCCTCTA
CTTCCGTGGGTAGCACCACTACCAAAGCCGCCAAACCCAAGCCCCTTGGCGATATTCTCTACGAAGAAGAGTCTCGTCTC
AATACCCATGACGGCGAGCTAAACCGCGTGCTTGGGGGTGGCCTGGTACCTGGCTCACTAGTGCTTATTGGTGGCGAGCC
AGGCATTGGCAAGAGCACCCTTATGCTCCAGATTGCCATGCACATGGGTAACCTGCGCATTCTGTATGTGTCAGGTGAGG
AAAGCGAGCAGCAGATCAAGATGCGAGCTGAGCGCCTTGGGAAGCAGCACCCCAACCTCTACATTCTCACGGAAACGGGA
ACGCAGAATATCTTCCGGCAGATTGACCAGCTCCAGCCCAACGTGGTTATCATCGACTCCATCCAGACCCTGCACTCTTC
GCTGGTAGAAGCGGGGGCTGGCTCAGTGAGTCAGGTGCGGGAGTGCACTACTGAGTTGCTGAAATATGCCAAGGATACGG
GCGTGCCGGTGCTACTCATTGGCCACATTACTAAAGACGGTTCCATTGCCGGTCCCAAGATTCTGGAGCATATGGTGGAT
ACGGTATTGCAGTTTGAGGGCGACCGTCACCTGAGCTACCGCTTGCTGCGCACGGTAAAAAACCGCTTCGGCTCCACCTC
TGAGCTAGGGATTTATGAGATGCAGGGCAGTGGCCTACGGCAGGTTAGTAACCCCTCCGAGATTTTGCTGAGCCAGCGCA
CTGAGAGCCTGAGCGGTATGGCCATTGGGGCCACGCTGGAAGGCAACCGGCCCCTGCTGGTGGAGGTGCAGGCCCTAGTA
ACGCCTGCTACCTATGGCACTCCCCAGCGCAGCAGCACCGGCTTTGATGCCAAGCGCCTGCAGATGCTGCTGGCGGTGCT
GGAAAAGCGCAGCGGCCTCCGCTTGGGCCAGCATGACGTGTTCCTGAACATTGCTGGTGGCCTCCGCCTCGATGACCCGG
CTCTGGATCTGGCCGTATGCGCCGCCGTAGTCAGCAGCCTGAATGATGTGCCCATTGCCGGCGAAGTGTGCTTGGCGGCG
GAAGTGGGCCTGAGCGGTGAAATTAGGGCCGTGAGCCGGCTTGATCAGCGCCTGTCAGAGGCCGAGAAGCTGGGCTTTGC
CGAAATGTACATCTCCCAGTTCAATGCCCGTGGGCTTGATATTGCCCGCTACGGCATCCGCGTGCACCCTTCGGGCCGCC
TAGATGAGGTCCTGAACGGGCTATTTGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.154

95.248

0.497
  radA Streptococcus pneumoniae Rx1

47.414

100

0.475
  radA Streptococcus pneumoniae D39

47.414

100

0.475
  radA Streptococcus pneumoniae R6

47.414

100

0.475
  radA Streptococcus pneumoniae TIGR4

47.414

100

0.475
  radA Streptococcus mitis NCTC 12261

47.414

100

0.475
  radA Streptococcus mitis SK321

47.414

100

0.475