Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN82_RS19290 Genome accession   NZ_CP095053
Coordinates   4609603..4610991 (+) Length   462 a.a.
NCBI ID   WP_245093034.1    Uniprot ID   A0A8T9SSG0
Organism   Hymenobacter aerilatus strain 5413 J-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4604603..4615991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN82_RS19275 (MUN82_19275) - 4605667..4606008 (-) 342 WP_245093030.1 STAS domain-containing protein -
  MUN82_RS19280 (MUN82_19280) - 4606214..4607989 (-) 1776 WP_311136408.1 FAD-dependent oxidoreductase -
  MUN82_RS19285 (MUN82_19285) - 4608052..4609443 (-) 1392 WP_245093032.1 ATP-binding protein -
  MUN82_RS19290 (MUN82_19290) radA 4609603..4610991 (+) 1389 WP_245093034.1 DNA repair protein RadA Machinery gene
  MUN82_RS19295 (MUN82_19295) - 4611270..4612736 (+) 1467 WP_245093036.1 TlpA disulfide reductase family protein -
  MUN82_RS19300 (MUN82_19300) - 4612881..4613903 (+) 1023 WP_245093038.1 SPASM domain-containing protein -
  MUN82_RS19305 (MUN82_19305) - 4613908..4614666 (-) 759 WP_245093040.1 DUF2490 domain-containing protein -
  MUN82_RS19310 (MUN82_19310) - 4614786..4615634 (-) 849 WP_245093042.1 pirin family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50158.52 Da        Isoelectric Point: 6.3162

>NTDB_id=674854 MUN82_RS19290 WP_245093034.1 4609603..4610991(+) (radA) [Hymenobacter aerilatus strain 5413 J-13]
MAKIKTLYFCQNCGAQSVKWIGRCPSCGEWNTYVEEVVQKEDTQAAGSWKPPTSAPTLSKVAKPRPVSEIHYEEEARIAT
QDGELNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIAMSLRRLKVLYVSGEESEQQIKMRAERLGDQHPGCYILTETNTQ
NIFKQIDQLQPNILIIDSIQTLHSGLVESGAGSVSQVRECTAELLKYAKETGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGAGLRQVSNPSEILLSQRHGDELSGMAIGATLEGNRPLLVEVQALVT
PATYGTPQRSATGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDIPIRGEVCLAAE
VGLSGEIRAVSRLDQRLGEAEKLGFAEMYISQFNARGLDLARYGIRVQPAGRLDEVLSGLFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=674854 MUN82_RS19290 WP_245093034.1 4609603..4610991(+) (radA) [Hymenobacter aerilatus strain 5413 J-13]
ATGGCCAAGATCAAAACCCTTTATTTCTGCCAGAATTGCGGGGCGCAATCCGTGAAATGGATTGGCCGCTGCCCCAGCTG
CGGCGAGTGGAATACCTACGTGGAGGAAGTGGTGCAGAAGGAAGACACCCAGGCGGCCGGCTCCTGGAAGCCGCCTACCT
CGGCCCCTACCCTTAGCAAAGTGGCCAAGCCCCGGCCCGTAAGCGAAATTCATTACGAAGAGGAAGCCCGCATCGCCACC
CAGGATGGCGAGCTGAACCGCGTGCTGGGCGGCGGCATTGTGCCTGGCTCGTTGGTGCTCATTGGCGGCGAGCCAGGCAT
CGGCAAAAGCACGCTGATGTTGCAGATTGCCATGTCGTTGCGGCGGCTGAAGGTGCTCTATGTGTCGGGCGAGGAAAGCG
AGCAGCAGATCAAGATGCGCGCCGAGCGTCTGGGCGACCAGCACCCCGGCTGCTACATCCTCACGGAGACGAACACCCAG
AACATCTTCAAGCAGATCGATCAGCTCCAGCCCAACATCCTCATCATCGACTCCATCCAGACCCTGCACTCGGGGCTGGT
AGAATCGGGGGCGGGCTCGGTGAGCCAGGTGCGCGAGTGTACCGCCGAACTGCTGAAGTACGCCAAGGAAACCGGCGTGC
CAGTGCTGCTCATCGGCCACATCACCAAAGACGGCAGCATTGCCGGCCCCAAAATCCTGGAGCATATGGTGGATACGGTG
CTGCAGTTTGAGGGCGACCGGCACCTGAGCTACCGCATCTTGCGCACCACCAAAAACCGTTTTGGCTCTACCTCTGAGCT
GGGCATCTACGAGATGCAGGGCGCCGGACTGCGACAAGTGAGCAATCCTTCGGAAATCCTGCTTTCCCAGCGCCACGGCG
ACGAGCTGAGCGGCATGGCCATTGGGGCTACCCTGGAGGGCAACCGCCCGCTGCTAGTAGAGGTGCAAGCCCTCGTGACG
CCCGCCACCTACGGCACGCCCCAGCGCTCGGCCACGGGCTTCGACAGCAAGCGCCTGCAAATGTTGCTGGCTGTGCTGGA
GAAGCGTTCGGGCTTGCGCCTGGGTCAGCACGACGTGTTCCTGAACATTGCCGGTGGCCTGCGTCTCGACGACCCCGCTC
TAGACCTAGCTGTATGCGCCGCCGTAGTCAGTTCCCTCAATGATATTCCGATTCGGGGGGAGGTGTGCCTAGCTGCCGAG
GTAGGGCTGAGCGGCGAAATCCGGGCCGTGAGTCGGCTCGACCAGCGCCTGGGCGAGGCCGAGAAGCTGGGATTTGCCGA
AATGTACATTTCCCAGTTTAACGCCCGCGGGCTGGATCTGGCCCGCTACGGCATTCGGGTGCAGCCTGCCGGCCGCCTCG
ATGAGGTACTGAGCGGCCTGTTTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.647

100

0.509
  radA Streptococcus pneumoniae Rx1

50.324

100

0.504
  radA Streptococcus pneumoniae D39

50.324

100

0.504
  radA Streptococcus pneumoniae R6

50.324

100

0.504
  radA Streptococcus pneumoniae TIGR4

50.324

100

0.504
  radA Streptococcus mitis NCTC 12261

50.108

100

0.502
  radA Streptococcus mitis SK321

50.108

100

0.502