Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN81_RS01565 Genome accession   NZ_CP095050
Coordinates   368005..369402 (+) Length   465 a.a.
NCBI ID   WP_190926100.1    Uniprot ID   -
Organism   Hymenobacter sp. 5317J-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 363005..374402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN81_RS01550 (MUN81_01550) rfbA 363632..364510 (+) 879 WP_245114648.1 glucose-1-phosphate thymidylyltransferase RfbA -
  MUN81_RS01555 (MUN81_01555) - 364608..366266 (-) 1659 WP_245114649.1 FAD-dependent oxidoreductase -
  MUN81_RS01560 (MUN81_01560) - 366423..367829 (-) 1407 WP_245114650.1 ATP-binding protein -
  MUN81_RS01565 (MUN81_01565) radA 368005..369402 (+) 1398 WP_190926100.1 DNA repair protein RadA Machinery gene
  MUN81_RS01570 (MUN81_01570) - 369648..371267 (+) 1620 WP_245114651.1 TlpA disulfide reductase family protein -
  MUN81_RS01575 (MUN81_01575) - 371394..372413 (+) 1020 WP_245114652.1 SPASM domain-containing protein -
  MUN81_RS01580 (MUN81_01580) - 372496..372837 (-) 342 WP_245114653.1 hypothetical protein -
  MUN81_RS01585 (MUN81_01585) - 372974..373192 (-) 219 WP_245114654.1 hypothetical protein -
  MUN81_RS01590 (MUN81_01590) - 373321..374133 (-) 813 WP_348533156.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50047.52 Da        Isoelectric Point: 6.3631

>NTDB_id=674842 MUN81_RS01565 WP_190926100.1 368005..369402(+) (radA) [Hymenobacter sp. 5317J-9]
MAKARTVFFCQNCGAQSAKWIGRCPACGEWNTYVEEVVQKETAATTTGQWKPASTVPGGNLAKAAKSVQLGDILVEDEPR
IITPDGELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLKRMKVLYVSGEESEAQIKMRAERMAAGQQSGCYILTE
TNTQNIFRQIDQVQPNILVIDSIQTMHSTLVESGAGSVSQVRECTAEFLKFAKETSTPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGDGLRQVSNPSEILLSQRGESLSGMAIGATLEGNRPLLVEVQA
LVSPTAYGTPQRSSTGFDAKRLQMLLAVLEKRAGLRLGQHDVFLNIAGGLRLDDPALDMAVCAAVVSSLNDLPIPGNVCL
AAEVGLSGEIRAVSRLDQRLAEAEKLGFREMYVSQFNGKGLDLARFGLKVQAVSRLDEVLNGLFG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=674842 MUN81_RS01565 WP_190926100.1 368005..369402(+) (radA) [Hymenobacter sp. 5317J-9]
ATGGCCAAAGCCAGAACCGTCTTTTTCTGTCAGAACTGCGGCGCGCAGAGCGCTAAGTGGATAGGCCGCTGCCCGGCCTG
CGGCGAGTGGAACACCTACGTCGAAGAAGTGGTCCAGAAAGAAACCGCGGCCACCACCACGGGCCAGTGGAAGCCCGCCA
GCACGGTGCCCGGCGGCAACTTGGCCAAAGCGGCAAAATCCGTCCAGCTCGGCGACATCTTGGTGGAAGACGAGCCTCGC
ATTATCACCCCCGACGGCGAGCTGAACCGCGTGCTGGGCGGCGGCATCGTGCCGGGCTCCATGGTGCTCATCGGCGGCGA
GCCGGGCATCGGCAAGAGCACGCTCATGCTGCAAATTGCCCTCAGCCTGAAGCGGATGAAGGTGCTCTACGTGAGCGGCG
AGGAAAGCGAAGCCCAGATAAAGATGCGCGCCGAGCGCATGGCCGCCGGCCAGCAGTCGGGCTGCTACATCCTCACCGAA
ACCAACACCCAGAACATCTTCCGGCAGATTGACCAGGTGCAGCCCAACATCCTCGTCATCGACTCCATCCAGACCATGCA
CTCCACGCTGGTGGAAAGCGGCGCCGGCAGCGTGAGCCAGGTGCGCGAGTGCACCGCCGAGTTCCTCAAGTTTGCCAAGG
AAACCAGCACGCCTGTGCTGCTCATCGGCCACATTACGAAGGACGGCAGCATTGCCGGCCCCAAAATCCTGGAGCACATG
GTGGACACCGTGCTGCAGTTCGAGGGCGACCGGCACCTGAGCTACCGCATTCTGCGCACCACCAAAAACCGCTTCGGCAG
CACCTCCGAGCTGGGCATCTACGAGATGCAGGGCGACGGCCTGCGCCAGGTGAGCAACCCCTCCGAAATCCTGCTCTCGC
AGCGCGGCGAGAGCCTGAGCGGCATGGCCATCGGAGCCACGCTGGAGGGCAACCGCCCGCTGCTGGTGGAGGTGCAGGCC
CTGGTGTCGCCCACGGCCTACGGCACGCCGCAGCGCAGCAGCACCGGCTTCGACGCCAAGCGCCTGCAAATGCTGCTGGC
CGTGCTCGAAAAGCGCGCCGGCCTGCGCCTGGGTCAGCACGACGTGTTCCTGAACATCGCCGGCGGCCTGCGCCTCGACG
ACCCCGCCCTCGACATGGCCGTGTGCGCCGCCGTGGTGTCGTCGCTCAACGACCTGCCCATTCCCGGCAACGTGTGCCTG
GCGGCCGAGGTCGGGCTGAGCGGCGAAATCCGCGCCGTGAGCCGCCTCGACCAGCGCCTGGCCGAAGCCGAAAAATTAGG
ATTCCGGGAGATGTACGTGTCGCAGTTCAACGGCAAAGGGTTGGACTTAGCCCGGTTTGGCCTGAAGGTGCAAGCCGTGA
GCCGGCTCGACGAAGTATTGAATGGCCTGTTCGGTTAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-462)

AAA domain (AAA_25)

(81-229)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.251

100

0.495
  radA Streptococcus pneumoniae Rx1

48.188

100

0.486
  radA Streptococcus pneumoniae D39

48.188

100

0.486
  radA Streptococcus pneumoniae R6

48.188

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.188

100

0.486
  radA Streptococcus mitis NCTC 12261

47.974

100

0.484
  radA Streptococcus mitis SK321

47.974

100

0.484