Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUN80_RS04775 Genome accession   NZ_CP095049
Coordinates   1115017..1116402 (+) Length   461 a.a.
NCBI ID   WP_244720313.1    Uniprot ID   -
Organism   Hymenobacter cellulosivorans strain 5116 S-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110017..1121402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN80_RS04760 (MUN80_04760) - 1110136..1111536 (-) 1401 WP_244720304.1 sensor histidine kinase -
  MUN80_RS04765 (MUN80_04765) - 1111677..1114199 (+) 2523 WP_244720307.1 T9SS type A sorting domain-containing protein -
  MUN80_RS04770 (MUN80_04770) - 1114327..1114779 (-) 453 WP_244720310.1 DUF2846 domain-containing protein -
  MUN80_RS04775 (MUN80_04775) radA 1115017..1116402 (+) 1386 WP_244720313.1 DNA repair protein RadA Machinery gene
  MUN80_RS04780 (MUN80_04780) - 1116600..1118069 (+) 1470 WP_244720315.1 TlpA disulfide reductase family protein -
  MUN80_RS04785 (MUN80_04785) - 1118248..1119267 (+) 1020 WP_244720317.1 SPASM domain-containing protein -
  MUN80_RS04790 (MUN80_04790) - 1119468..1120766 (-) 1299 WP_244720319.1 erythromycin esterase family protein -
  MUN80_RS04795 (MUN80_04795) - 1120855..1121196 (-) 342 WP_244720321.1 hypothetical protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50031.34 Da        Isoelectric Point: 6.3967

>NTDB_id=674836 MUN80_RS04775 WP_244720313.1 1115017..1116402(+) (radA) [Hymenobacter cellulosivorans strain 5116 S-27]
MAKLKTLYFCQKCGAQSAKWIGRCPSCGEWNTYVEEVIQKDDTQAAGSWKPPTASPGGKTVAKPRVIGEIHYEEESRFDT
NDSELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMSLQQMKVLYISGEESEQQIKMRAERLGPQHPQCYILTETNTQ
NIFKQIDQLQPNVVIVDSIQTLHSGLVESGAGSVSQVRECTAELLKFAKETGVPVLIIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRTESLSGMAIGATLEGNRPLLVEVQALVTP
ATYGTPQRSATGFDAKRLNMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDVAVCAAVVSSLNDLPIPGNVCLAAEV
GLSGEIRAVSRLDQRLSEAEKLGFREMYISQFNARGLDLARYGIRAQPVGRLDEVLSGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=674836 MUN80_RS04775 WP_244720313.1 1115017..1116402(+) (radA) [Hymenobacter cellulosivorans strain 5116 S-27]
ATGGCCAAGCTCAAGACTCTCTATTTCTGTCAAAAATGCGGTGCCCAGTCAGCTAAGTGGATCGGGCGCTGCCCGTCCTG
CGGCGAGTGGAACACCTACGTGGAGGAAGTAATCCAGAAGGACGACACCCAGGCGGCTGGCTCCTGGAAACCGCCTACGG
CCAGCCCCGGCGGCAAAACCGTAGCCAAGCCCCGCGTCATCGGTGAAATTCACTACGAGGAAGAATCCCGCTTCGACACC
AATGACTCGGAGCTAAACCGGGTACTGGGCGGCGGCCTCGTGCCGGGCTCGTTGGTGCTGATTGGCGGGGAGCCGGGCAT
TGGCAAAAGCACCCTGATGCTGCAGATTGCCATGAGCTTGCAGCAAATGAAGGTGCTCTACATTTCGGGCGAGGAAAGTG
AGCAGCAGATCAAGATGCGGGCCGAGCGCCTGGGTCCCCAGCACCCGCAGTGCTATATCCTGACCGAAACCAACACCCAG
AACATTTTCAAGCAGATCGACCAGCTGCAGCCCAACGTGGTCATCGTGGACTCTATCCAGACCCTGCATTCGGGCCTGGT
GGAATCGGGGGCGGGCTCGGTAAGCCAGGTGCGCGAGTGCACCGCTGAGCTGCTCAAGTTTGCCAAGGAAACCGGCGTGC
CGGTGCTCATCATCGGCCACATCACCAAGGACGGCTCCATTGCCGGCCCCAAGATCCTGGAGCACATGGTGGACACCGTA
CTGCAGTTTGAGGGCGACCGGCACCTCTCGTACCGCATCCTGCGCACCACCAAAAACCGCTTCGGTAGCACTTCGGAGCT
CGGTATTTACGAAATGCAGGGCACCGGTCTGCGCCAGGTGAGCAACCCCTCGGAGATTCTGCTCAGCCAGCGCACCGAGA
GCCTCAGCGGCATGGCCATTGGGGCCACGCTGGAAGGTAACCGGCCCCTGCTGGTGGAAGTGCAGGCCCTGGTAACGCCG
GCTACCTACGGCACGCCCCAGCGCTCGGCCACTGGCTTCGACGCCAAGCGCCTGAACATGCTGCTGGCCGTGCTCGAAAA
GCGTAGCGGCCTGCGCCTGGGCCAGCACGACGTGTTCCTCAACATTGCCGGCGGCCTGCGCCTCGACGACCCGGCCCTGG
ACGTGGCCGTGTGCGCCGCGGTGGTATCGTCGCTGAACGACTTGCCAATTCCTGGCAACGTGTGCTTGGCGGCGGAAGTG
GGGTTGAGTGGCGAAATCCGGGCGGTAAGCCGGCTGGATCAGCGGCTGTCGGAAGCCGAGAAGCTGGGGTTCCGGGAAAT
GTACATCTCCCAGTTCAACGCCCGCGGATTAGATTTGGCCCGATACGGAATCAGAGCTCAACCGGTAGGCCGCCTCGACG
AAGTACTTAGCGGATTATTCGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.62

100

0.518
  radA Streptococcus pneumoniae Rx1

49.784

100

0.499
  radA Streptococcus pneumoniae D39

49.784

100

0.499
  radA Streptococcus pneumoniae R6

49.784

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.784

100

0.499
  radA Streptococcus mitis NCTC 12261

49.567

100

0.497
  radA Streptococcus mitis SK321

49.567

100

0.497