Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAFDA_RS04665 Genome accession   NZ_AP014942
Coordinates   951469..952455 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946469..957455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS04640 (SAFDA_0865) opp4B 946682..947644 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  SAFDA_RS04645 (SAFDA_0866) opp4C 947656..948537 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  SAFDA_RS04650 (SAFDA_0867) trpS 948579..949568 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  SAFDA_RS04655 (SAFDA_0868) spxA 949863..950258 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAFDA_RS04660 (SAFDA_0869) mecA 950629..951348 (+) 720 WP_001217728.1 adaptor protein MecA -
  SAFDA_RS04665 (SAFDA_0870) coiA 951469..952455 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  SAFDA_RS04670 (SAFDA_0871) pepF 952503..954311 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SAFDA_RS04675 (SAFDA_0872) yjbH 954771..955577 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SAFDA_RS04680 (SAFDA_0873) - 955600..955965 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  SAFDA_RS04685 (SAFDA_0874) - 956069..956662 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  SAFDA_RS04690 (SAFDA_0875) - 956848..957195 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=67475 SAFDA_RS04665 WP_000959292.1 951469..952455(+) (coiA) [Staphylococcus aureus strain FDA209P]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=67475 SAFDA_RS04665 WP_000959292.1 951469..952455(+) (coiA) [Staphylococcus aureus strain FDA209P]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment