Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUK70_RS17940 Genome accession   NZ_CP094997
Coordinates   4214710..4216083 (-) Length   457 a.a.
NCBI ID   WP_234608515.1    Uniprot ID   A0A9X1TDH5
Organism   Dyadobacter chenwenxiniae strain LJ419     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4209710..4221083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK70_RS17915 (MUK70_17915) ychF 4210263..4211363 (-) 1101 WP_234608511.1 redox-regulated ATPase YchF -
  MUK70_RS17920 (MUK70_17920) - 4211523..4211870 (-) 348 WP_026630755.1 DUF3276 family protein -
  MUK70_RS17925 (MUK70_17925) - 4212108..4212560 (+) 453 WP_234608512.1 septal ring lytic transglycosylase RlpA family protein -
  MUK70_RS17930 (MUK70_17930) - 4212573..4213487 (+) 915 WP_234608513.1 DUF58 domain-containing protein -
  MUK70_RS17935 (MUK70_17935) - 4213538..4214686 (+) 1149 WP_234654250.1 hypothetical protein -
  MUK70_RS17940 (MUK70_17940) radA 4214710..4216083 (-) 1374 WP_234608515.1 DNA repair protein RadA Machinery gene
  MUK70_RS17945 (MUK70_17945) - 4216251..4216970 (+) 720 WP_234654252.1 porin family protein -
  MUK70_RS17950 (MUK70_17950) - 4217074..4217472 (-) 399 WP_234608517.1 LytTR family DNA-binding domain-containing protein -
  MUK70_RS17955 (MUK70_17955) pheS 4217803..4218843 (+) 1041 WP_234608518.1 phenylalanine--tRNA ligase subunit alpha -
  MUK70_RS17960 (MUK70_17960) - 4219038..4219769 (-) 732 WP_234654254.1 esterase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50587.10 Da        Isoelectric Point: 6.1001

>NTDB_id=674726 MUK70_RS17940 WP_234608515.1 4214710..4216083(-) (radA) [Dyadobacter chenwenxiniae strain LJ419]
MAKAKTAYFCQECGYNSPKWVGRCPSCGEWNTFVQEVIEKEDKKTAVAWKGVNLASRPRSIAEIEYQNEPRITTFDGELN
RVLGGGIVQGSLVLIGGEPGIGKSTLMLQIALTLSNKKVLYVSGEESDQQIKMRAERMDSKSDNCFILTETHTQNIFRQI
EDFQPEILIIDSIQTMQSTYIESGAGSVSQVRECTAEFMKYAKEMGVPVFLIGHITKDGSLAGPKVLEHMVDTVLQFEGD
RHNTYRILRTVKNRFGSTSELGIYEMHGSGLRQVSNPSEILISQRDEPVSGIAIGSMMEGNRPLLIEIQSLVSVANYGTP
QRSSTGFDGKRLQMLLAVLEKRGGFRLGVQDVFLNVAGGLKVEDPAIDLAVIASIVSSYEDKFIPPSVCFAAEVGLGGEV
RAVSRIENRIFEAEKLGFKKVYISKYNSRGLDMKKFRIEVIAVASLDELFMSLFLNT

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=674726 MUK70_RS17940 WP_234608515.1 4214710..4216083(-) (radA) [Dyadobacter chenwenxiniae strain LJ419]
ATGGCCAAAGCCAAGACAGCTTATTTTTGTCAGGAATGTGGGTATAATTCACCCAAATGGGTGGGCCGCTGCCCCTCGTG
CGGAGAATGGAATACTTTTGTTCAGGAAGTTATAGAAAAAGAGGATAAAAAAACAGCAGTTGCCTGGAAAGGCGTCAATC
TGGCCAGCAGACCGCGTTCAATTGCTGAGATAGAATACCAAAATGAGCCGCGGATCACAACATTTGACGGTGAGCTGAAC
CGGGTGCTGGGAGGCGGAATCGTGCAAGGGTCGCTGGTTTTGATAGGCGGGGAGCCTGGAATCGGGAAGTCGACGCTGAT
GTTGCAAATTGCACTGACGCTTTCCAACAAAAAAGTTTTATATGTGTCGGGAGAAGAGTCCGATCAGCAGATCAAGATGC
GGGCGGAACGAATGGATTCCAAAAGCGACAACTGCTTTATCCTTACCGAAACGCACACGCAGAATATTTTCCGGCAAATT
GAAGATTTCCAGCCAGAAATCCTGATCATCGACTCGATCCAGACGATGCAGTCCACATACATTGAGTCTGGCGCAGGCAG
TGTGTCACAGGTGCGGGAATGTACAGCAGAGTTTATGAAATATGCTAAGGAAATGGGCGTTCCTGTTTTCCTGATCGGTC
ACATTACCAAGGACGGTTCGCTTGCAGGACCGAAAGTGCTAGAACATATGGTGGACACGGTTTTGCAATTCGAGGGAGAC
CGTCATAACACTTATCGCATTCTGAGAACTGTGAAAAACCGCTTTGGGAGCACGTCAGAGCTTGGGATTTACGAAATGCA
TGGTTCCGGATTGCGGCAAGTAAGTAACCCGTCCGAAATCCTCATTTCGCAGCGCGACGAACCCGTAAGCGGCATTGCGA
TCGGGTCGATGATGGAAGGAAACAGGCCATTGCTTATTGAAATACAATCCCTTGTCAGCGTTGCCAATTATGGGACGCCA
CAGCGGAGCAGCACGGGGTTTGATGGTAAAAGATTGCAAATGTTGCTGGCCGTTTTGGAAAAGCGTGGCGGCTTTCGGTT
AGGCGTTCAGGATGTGTTTCTTAATGTTGCCGGTGGATTGAAGGTGGAAGATCCTGCCATTGACCTGGCGGTTATTGCTT
CTATTGTTTCTTCTTATGAAGACAAATTTATCCCGCCTTCCGTGTGTTTCGCTGCGGAAGTAGGGCTTGGAGGTGAAGTA
AGGGCCGTAAGCCGGATCGAAAACAGGATTTTTGAAGCGGAGAAACTGGGGTTTAAAAAGGTTTACATCTCCAAATACAA
TAGCAGAGGGCTGGACATGAAGAAGTTCAGGATAGAAGTTATCGCTGTTGCAAGCCTGGATGAGCTTTTTATGTCTCTTT
TCCTTAACACTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

AAA domain (AAA_25)

(78-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.88

98.687

0.532
  radA Streptococcus pneumoniae Rx1

52.088

99.562

0.519
  radA Streptococcus pneumoniae D39

52.088

99.562

0.519
  radA Streptococcus pneumoniae R6

52.088

99.562

0.519
  radA Streptococcus pneumoniae TIGR4

52.088

99.562

0.519
  radA Streptococcus mitis NCTC 12261

52.088

99.562

0.519
  radA Streptococcus mitis SK321

51.868

99.562

0.516