Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L9B60_RS15650 Genome accession   NZ_CP094975
Coordinates   3418010..3419377 (+) Length   455 a.a.
NCBI ID   WP_249671563.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3413010..3424377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS15620 cydB 3413078..3414085 (+) 1008 WP_249671557.1 cytochrome d ubiquinol oxidase subunit II -
  L9B60_RS15625 - 3414141..3414302 (+) 162 WP_249671558.1 DUF2474 domain-containing protein -
  L9B60_RS15630 - 3414395..3415519 (-) 1125 WP_249671559.1 methyltransferase -
  L9B60_RS15635 - 3415674..3416378 (-) 705 WP_249671560.1 autoinducer binding domain-containing protein -
  L9B60_RS15640 - 3416642..3417418 (+) 777 WP_249671561.1 ferredoxin--NADP reductase -
  L9B60_RS15645 mscL 3417419..3417832 (-) 414 WP_249671562.1 large-conductance mechanosensitive channel protein MscL -
  L9B60_RS15650 radA 3418010..3419377 (+) 1368 WP_249671563.1 DNA repair protein RadA Machinery gene
  L9B60_RS15655 - 3419388..3419756 (-) 369 WP_249671564.1 PilZ domain-containing protein -
  L9B60_RS15660 - 3420038..3422104 (+) 2067 WP_249671565.1 carbon starvation CstA family protein -
  L9B60_RS15665 - 3422123..3422320 (+) 198 WP_008371622.1 YbdD/YjiX family protein -
  L9B60_RS15670 yjiA 3422435..3423391 (+) 957 WP_249671566.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48716.26 Da        Isoelectric Point: 7.1316

>NTDB_id=674656 L9B60_RS15650 WP_249671563.1 3418010..3419377(+) (radA) [Pseudomonas abieticivorans strain PIA16]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEALQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLKVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=674656 L9B60_RS15650 WP_249671563.1 3418010..3419377(+) (radA) [Pseudomonas abieticivorans strain PIA16]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACTGAGTGCGGCGCCACCTTCCCGAAATGGGCCGGCCAATGCGGTGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGATCGAGAGCGGCGGCGCTGCTGCCCCGGCCGGTCGGACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTAGAAGAAATCCCACGCTTCTCCACCAACTCCGCCGAACTA
GACCGCGTGCTCGGCGGTGGCCTGGTCGACGGTTCGGTGGTTCTGATCGGCGGCGACCCAGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCCTGTGCAACCTGGCCACGCGCATGCCCGCGCTGTATGTCACTGGCGAGGAATCCCAGCAGCAGGTGG
CCATGCGTGCCCGCCGCCTGGGCCTGCCCCAGGACCAGTTGCGGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCCCGCGTCGAAAAACCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAGGCCCTGCAGTCGGCGCC
CGGTGGCGTGTCCCAGGTGCGTGAAAGTGCGGCCCTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATCTTCCTGG
TAGGCCACGTCACCAAGGAAGGTGCGCTGGCAGGTCCACGTGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGCCGCCTGCGCCTGTTGCGCGCGGTGAAAAACCGCTTCGGCGCGGTCAATGAATTGGGCGTGTTCGG
CATGACCGACAAGGGCCTCAAGGAAGTCTCCAACCCTTCGGCGATTTTCCTGACGCGTGCCCAGGAAGAAGTGCCTGGCA
GTGTGGTCATGGCCACTTGGGAAGGCACGCGGCCGATGTTGGTGGAGGTGCAGGCCCTGGTCGACGACAGCCACATGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGTGGCAT
CCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCCTCGGACCTGGCCTTGA
TGGCCGCCGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCCCACGACCTGCTGGTGTTCGGCGAAGTTGGCCTGTCGGGC
GAAGTGCGTCCGGTGCCGAGCGGCCAGGAACGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGCGCCATTGTGCCCAA
GGGCAACGCCCCTAAGGAGTCGCCGCCGGGGTTGAAAGTGATCGCGGTCACGCGGTTGGAACAGGCGCTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464