Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA20_RS00135 Genome accession   NZ_CP109344
Coordinates   41163..41381 (-) Length   72 a.a.
NCBI ID   WP_406361025.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01579     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36163..46381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA20_RS00115 (OHA20_00115) - 37291..37785 (+) 495 WP_406361018.1 hypothetical protein -
  OHA20_RS00120 (OHA20_00120) - 37842..38576 (-) 735 WP_406361020.1 DUF6308 family protein -
  OHA20_RS00125 (OHA20_00125) - 38644..39390 (+) 747 WP_406361021.1 vWA domain-containing protein -
  OHA20_RS00130 (OHA20_00130) - 39519..40805 (-) 1287 WP_406361023.1 VWA domain-containing protein -
  OHA20_RS00135 (OHA20_00135) dinR/lexA 41163..41381 (-) 219 WP_406361025.1 LexA family protein Regulator
  OHA20_RS00140 (OHA20_00140) - 41378..41623 (-) 246 WP_406361026.1 hypothetical protein -
  OHA20_RS00145 (OHA20_00145) - 41929..42309 (-) 381 WP_406361028.1 tetratricopeptide repeat protein -
  OHA20_RS00150 (OHA20_00150) - 42729..43196 (+) 468 WP_355230861.1 MarR family transcriptional regulator -
  OHA20_RS00155 (OHA20_00155) - 43677..43985 (+) 309 WP_406361031.1 hypothetical protein -
  OHA20_RS00160 (OHA20_00160) - 44123..45079 (+) 957 WP_406361033.1 hypothetical protein -
  OHA20_RS00165 (OHA20_00165) - 45670..46101 (-) 432 WP_355230856.1 tautomerase family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7789.88 Da        Isoelectric Point: 11.8716

>NTDB_id=674537 OHA20_RS00135 WP_406361025.1 41163..41381(-) (dinR/lexA) [Streptomyces sp. NBC_01579]
MSAGRPTARQEAVLRAIRDVIADTGDAPTVREIGQRVGLSSSGSVAYQLGRLEKLGLISRNARHWRSCRLTG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=674537 OHA20_RS00135 WP_406361025.1 41163..41381(-) (dinR/lexA) [Streptomyces sp. NBC_01579]
GTGAGCGCGGGCCGTCCGACTGCCCGGCAGGAGGCGGTCCTGCGGGCGATCAGGGATGTCATTGCGGACACCGGGGATGC
TCCCACGGTCCGGGAGATCGGACAGCGCGTCGGACTGTCCAGCTCGGGATCGGTCGCCTACCAGCTCGGCCGCCTGGAGA
AGCTCGGCCTGATCAGCCGCAACGCACGGCACTGGCGCTCCTGCCGACTCACCGGATAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(7-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.188

88.889

0.375