Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG278_RS32065 Genome accession   NZ_CP109337
Coordinates   7183733..7184767 (-) Length   344 a.a.
NCBI ID   WP_328333763.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7178733..7189767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS32050 (OG278_32070) - 7179599..7181770 (+) 2172 WP_328333757.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein -
  OG278_RS32055 (OG278_32075) - 7181793..7182554 (-) 762 WP_328333759.1 MerR family transcriptional regulator -
  OG278_RS32060 (OG278_32080) - 7182853..7183770 (+) 918 WP_328333761.1 oxygenase MpaB family protein -
  OG278_RS32065 (OG278_32085) cytR 7183733..7184767 (-) 1035 WP_328333763.1 LacI family DNA-binding transcriptional regulator Regulator
  OG278_RS32070 (OG278_32090) - 7184959..7186446 (-) 1488 WP_328333765.1 M1 family metallopeptidase -
  OG278_RS32075 (OG278_32095) - 7186685..7188322 (+) 1638 WP_328333767.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36770.77 Da        Isoelectric Point: 6.4299

>NTDB_id=674532 OG278_RS32065 WP_328333763.1 7183733..7184767(-) (cytR) [Streptomyces sp. NBC_00455]
MPDPIHGSRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDRVQQAVEELGYVPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGRKDYDRIGRYLAGGHVDGALAFSLHTEDPLPAVIHRAGIPTVFGGRPV
WAGPESGLALPYADCDNRGGARTAVQHLVSLGRRHIAHIAGPQDQTSGIDRLDGYRDVLQDVDPGLTAQGAFTAESGAAA
MSGLLERRPEVDAVFAANDLMASGALQVLREHGRRVPHDVAVVGFDDMEKVAECTDPPLTTVRQDIEGMGRLMVRMLLRL
LDGESVTPPDSVIMPTGLVRRASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=674532 OG278_RS32065 WP_328333763.1 7183733..7184767(-) (cytR) [Streptomyces sp. NBC_00455]
TTGCCCGATCCGATCCACGGCTCCCGGCCGACTCTGGAGGCCGTCGCGGCCCGCGCGGGCGTGTCGCGGGCGACGGCCTC
GCGCGTCGTCAACGGCGGCGCCGGTGTGCGGCAGCCGCTGGTGGACCGAGTCCAGCAGGCTGTCGAGGAGCTCGGCTACG
TACCGAATCACGCGGCCAGGACGCTTGTCACCCGGCGCAACGGCGCGGTCGCGGTCATCATCGCCGAGCCGGAGATCCGG
ATCTTCTCGGACCCGTTCTTCTCCCAGCAGCTGCGCGGTATCAGCCGCGAACTGACCGCGCATGACTCGCAGTTGGTGCT
GCTGCTGGTGGAGGGCAGGAAGGACTACGACCGGATCGGCCGCTATCTGGCGGGCGGCCATGTCGACGGTGCGCTGGCCT
TCTCCCTGCACACCGAGGATCCGCTGCCCGCGGTGATCCACCGGGCCGGCATCCCCACGGTCTTCGGCGGCCGGCCGGTG
TGGGCGGGCCCGGAGTCCGGTCTCGCCCTGCCCTACGCCGACTGCGACAACCGGGGCGGCGCCCGCACGGCGGTCCAGCA
TCTGGTCTCGCTCGGACGCCGGCACATCGCGCACATCGCGGGCCCGCAGGACCAGACATCGGGGATCGACCGGCTGGACG
GTTACCGGGATGTGCTGCAGGACGTCGACCCCGGGCTCACCGCGCAGGGGGCCTTCACGGCGGAGAGCGGCGCCGCCGCG
ATGTCCGGACTCCTTGAGCGGCGGCCCGAAGTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCATCAGGGGCGCTCCA
GGTGCTGCGGGAACACGGCAGGCGGGTCCCCCACGACGTGGCGGTGGTGGGGTTCGACGACATGGAGAAGGTCGCGGAGT
GCACCGACCCGCCGCTGACGACGGTCCGTCAGGACATCGAGGGCATGGGGCGGTTGATGGTACGGATGCTGCTCCGCCTC
CTGGACGGGGAGAGCGTCACACCGCCGGATTCCGTGATCATGCCGACCGGCCTGGTGCGCCGGGCCTCCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.657

99.128

0.363