Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG278_RS27720 Genome accession   NZ_CP109337
Coordinates   6205024..6205818 (-) Length   264 a.a.
NCBI ID   WP_328332235.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6200024..6210818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS27705 (OG278_27720) - 6200032..6200772 (+) 741 WP_328332229.1 GNAT family N-acetyltransferase -
  OG278_RS27710 (OG278_27725) - 6201037..6202842 (+) 1806 WP_328332231.1 IucA/IucC family siderophore biosynthesis protein -
  OG278_RS27715 (OG278_27730) - 6202881..6204851 (+) 1971 WP_328332233.1 ATP-dependent DNA helicase -
  OG278_RS27720 (OG278_27735) dinR/lexA 6205024..6205818 (-) 795 WP_328332235.1 transcriptional repressor LexA Regulator
  OG278_RS27725 (OG278_27740) nrdR 6206380..6206892 (+) 513 WP_328332238.1 transcriptional regulator NrdR -
  OG278_RS27730 (OG278_27745) - 6207018..6209903 (+) 2886 WP_328332240.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28589.40 Da        Isoelectric Point: 7.4240

>NTDB_id=674521 OG278_RS27720 WP_328332235.1 6205024..6205818(-) (dinR/lexA) [Streptomyces sp. NBC_00455]
MTTTADTATITAQDRSQNRLEPVHAMNDAATGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=674521 OG278_RS27720 WP_328332235.1 6205024..6205818(-) (dinR/lexA) [Streptomyces sp. NBC_00455]
GTGACCACGACCGCAGACACCGCGACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCAACGGGCCCCGAAGGCCAGCTGCCCCCGCGACCCGCACGCTCGCTGCCCGGACGGCCTCCCGGTATCCGGG
CGGACAGCTCCGGACTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGCCGTGGATACCCG
CCCTCCATGCGCGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTCAGGGGCTCCGACCAGCCGAGCACCCAGACCA
CCGACACCACGGGCAAGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTGGCTGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTGCTGCCGCACAAT
GCCGCCTACCAGCCGATCCCGGGTGACGAAGCCACGATCCTCGGCAAGGTAGTGGCTGTACTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371