Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG278_RS13810 Genome accession   NZ_CP109337
Coordinates   3135949..3136929 (-) Length   326 a.a.
NCBI ID   WP_328327566.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130949..3141929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS13795 (OG278_13815) - 3132140..3132886 (+) 747 WP_328327562.1 DUF6227 family protein -
  OG278_RS13800 (OG278_13820) - 3133018..3134031 (-) 1014 WP_328327564.1 YafY family protein -
  OG278_RS13805 (OG278_13825) - 3134169..3135671 (+) 1503 WP_328335464.1 MFS transporter -
  OG278_RS13810 (OG278_13830) rpoS 3135949..3136929 (-) 981 WP_328327566.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG278_RS13815 (OG278_13835) - 3137155..3137682 (+) 528 WP_328327568.1 N-acetyltransferase family protein -
  OG278_RS13820 (OG278_13840) - 3137812..3138591 (-) 780 WP_328327570.1 class III extradiol ring-cleavage dioxygenase -
  OG278_RS13825 (OG278_13845) - 3138683..3139198 (+) 516 WP_328327572.1 MarR family transcriptional regulator -
  OG278_RS13830 (OG278_13850) - 3139356..3140885 (-) 1530 WP_328327574.1 MFS transporter -
  OG278_RS13835 (OG278_13855) - 3141208..3141846 (-) 639 WP_328327577.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36495.24 Da        Isoelectric Point: 5.1281

>NTDB_id=674490 OG278_RS13810 WP_328327566.1 3135949..3136929(-) (rpoS) [Streptomyces sp. NBC_00455]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQRILDGSVDSKAGGASRDEL
EALIAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPARVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=674490 OG278_RS13810 WP_328327566.1 3135949..3136929(-) (rpoS) [Streptomyces sp. NBC_00455]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACAGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATAGCACGTACGCCACTGCTCGACGCCGAAAAGGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCGGATCCTCGACGGTTCCGTGGACAGTAAGGCGGGTGGGGCCTCGCGTGACGAGCTG
GAGGCGCTGATTGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGCCTGGTCGTCGCTGTGGCCCG
CCGCTATCCGCGAGCGGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAATTCAACCG
CGAGCACGGCCGTGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACACCAAGCCGGCGCGTGTGAGCGATGTGCTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGCGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGTGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACGGCTTCGATCATCAAGATGCGCTTCGGCATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AACACGGGCTGACGCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.667

92.025

0.374