Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG278_RS11425 Genome accession   NZ_CP109337
Coordinates   2610821..2611837 (-) Length   338 a.a.
NCBI ID   WP_328326741.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605821..2616837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS11410 (OG278_11420) - 2606460..2607626 (-) 1167 WP_328326734.1 CoA transferase -
  OG278_RS11415 (OG278_11425) - 2607630..2609333 (-) 1704 WP_328326737.1 class I adenylate-forming enzyme family protein -
  OG278_RS11420 (OG278_11430) - 2609320..2610516 (-) 1197 WP_328326739.1 hypothetical protein -
  OG278_RS11425 (OG278_11435) cytR 2610821..2611837 (-) 1017 WP_328326741.1 LacI family DNA-binding transcriptional regulator Regulator
  OG278_RS11430 (OG278_11440) - 2611946..2613307 (-) 1362 WP_328326743.1 MFS transporter -
  OG278_RS11435 (OG278_11445) - 2613491..2614222 (-) 732 WP_328326745.1 metalloregulator ArsR/SmtB family transcription factor -
  OG278_RS11440 (OG278_11450) - 2614288..2615697 (+) 1410 WP_328326747.1 MFS transporter -
  OG278_RS11445 (OG278_11455) - 2615700..2615831 (-) 132 WP_328326749.1 DUF397 domain-containing protein -
  OG278_RS11450 (OG278_11460) - 2615788..2616741 (-) 954 WP_328326751.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 35308.44 Da        Isoelectric Point: 8.4520

>NTDB_id=674485 OG278_RS11425 WP_328326741.1 2610821..2611837(-) (cytR) [Streptomyces sp. NBC_00455]
MATLVDVAKRAGVSVGVVSRLLNGDETLRVRDETKRRVREAAAELEYTPNYAARALRKAKVGVIGLAVHDASNPVYSEIV
AGAQAEATKAGYALMLSDVDALATDDVMFKRVVSSGAIDGLLLQRAGTASDALVSKIASGQVPTVLLNDRTRGAIGSVAV
DDYTAAHMAVSHLIGLGHRRIGLLQVDGPQSRALRRRKGWADALTAAGLDAPRAGVFPGGHTAEQGYRGMTDLLSARKPP
TAVFAANVLSAVGALSAANDLGVSVPDDVSLVGLHDVFVANFLQPRLTVVRLPLFELGARAVTLLLKQLENEPAQHESIE
DPAPVMVIRASTAPPAAG

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=674485 OG278_RS11425 WP_328326741.1 2610821..2611837(-) (cytR) [Streptomyces sp. NBC_00455]
ATGGCCACTCTGGTCGACGTAGCGAAGCGGGCCGGCGTATCGGTCGGCGTTGTGTCCCGACTGCTGAACGGTGACGAGAC
TCTCCGCGTACGGGACGAGACCAAGCGCCGGGTCAGAGAAGCTGCGGCCGAACTGGAATACACGCCGAACTACGCCGCCA
GGGCGCTGCGCAAGGCCAAGGTCGGTGTGATCGGCCTGGCGGTGCACGACGCGAGCAACCCCGTCTACAGCGAGATCGTC
GCGGGCGCCCAGGCCGAGGCGACGAAGGCCGGTTACGCCCTCATGCTGTCGGACGTGGACGCTCTCGCCACGGACGACGT
GATGTTCAAGCGCGTCGTCTCCAGCGGTGCGATCGACGGGCTGCTCCTCCAGCGGGCCGGTACCGCGTCCGACGCACTGG
TGTCGAAGATCGCCTCCGGGCAGGTGCCGACCGTACTGCTCAACGACCGCACCCGGGGGGCCATCGGCAGTGTGGCCGTC
GACGACTACACGGCGGCGCACATGGCCGTCTCGCACCTGATCGGCCTCGGTCACCGGCGGATCGGACTGCTCCAGGTCGA
CGGCCCCCAGAGCCGTGCGCTCCGCAGGCGCAAGGGCTGGGCCGACGCTCTCACCGCCGCCGGGCTCGACGCACCGCGCG
CCGGTGTCTTCCCCGGCGGCCACACCGCCGAACAGGGTTACCGCGGTATGACCGACCTGCTCTCCGCGCGGAAGCCGCCG
ACCGCGGTGTTCGCCGCCAACGTGCTCTCCGCGGTCGGCGCTCTCAGCGCCGCCAACGACCTGGGCGTCTCCGTACCGGA
CGACGTCTCGCTGGTCGGCCTCCATGACGTCTTCGTCGCGAATTTCCTCCAGCCCCGGCTCACTGTGGTCCGGCTGCCGC
TGTTCGAGCTCGGCGCCAGAGCGGTCACGCTTCTCCTCAAGCAGCTGGAGAACGAACCGGCCCAGCACGAGAGCATCGAG
GACCCGGCGCCCGTCATGGTGATCCGTGCCTCCACCGCCCCGCCCGCAGCGGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-332)

Bacterial regulatory proteins, lacI family (LacI)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.569

100

0.361