Detailed information NTG0674428

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MUB28_RS08545
• Genome accession: NZ_CP094945
• Coordinates: 1671070..1672431 (-)
• Length: 453 a.a.
• NCBI ID: WP_080998440.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain VHProbi R08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1666070..1677431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MUB28_RS08515 (MUB28_08515)	-	1666769..1667686 (-)	918	Protein_1640	peptide ABC transporter ATP-binding protein	-
MUB28_RS08520 (MUB28_08520)	rplA	1667814..1668503 (-)	690	WP_002946412.1	50S ribosomal protein L1	-
MUB28_RS08525 (MUB28_08525)	rplK	1668603..1669028 (-)	426	WP_002953535.1	50S ribosomal protein L11	-
MUB28_RS08530 (MUB28_08530)	-	1669200..1669553 (+)	354	WP_002953536.1	DUF3397 domain-containing protein	-
MUB28_RS08535 (MUB28_08535)	-	1669645..1670142 (-)	498	WP_002947059.1	carbonic anhydrase	-
MUB28_RS08540 (MUB28_08540)	-	1670285..1670981 (-)	697	Protein_1645	TIGR00266 family protein	-
MUB28_RS08545 (MUB28_08545)	radA	1671070..1672431 (-)	1362	WP_080998440.1	DNA repair protein RadA	Machinery gene
MUB28_RS08550 (MUB28_08550)	-	1672609..1673055 (-)	447	WP_002947069.1	dUTP diphosphatase	-
MUB28_RS08555 (MUB28_08555)	-	1673269..1673871 (+)	603	Protein_1648	NADPH-dependent FMN reductase	-
MUB28_RS08560 (MUB28_08560)	-	1673890..1675141 (+)	1252	Protein_1649	NAD(P)H-dependent oxidoreductase	-
MUB28_RS08565 (MUB28_08565)	-	1675259..1676049 (+)	791	Protein_1650	formate/nitrite transporter family protein	-
MUB28_RS08570 (MUB28_08570)	-	1676058..1676631 (+)	574	Protein_1651	MptD family putative ECF transporter S component	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49418.80 Da
• Isoelectric Point: 6.6528

>NTDB_id=674428 MUB28_RS08545 WP_080998440.1 1671070..1672431(-) (radA) [Streptococcus thermophilus strain VHProbi R08]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide

• Length: 1362 bp

>NTDB_id=674428 MUB28_RS08545 WP_080998440.1 1671070..1672431(-) (radA) [Streptococcus thermophilus strain VHProbi R08]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACTTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (61-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (360-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	88.962	100	0.89
radA	Streptococcus pneumoniae D39	88.962	100	0.89
radA	Streptococcus pneumoniae R6	88.962	100	0.89
radA	Streptococcus pneumoniae TIGR4	88.962	100	0.89
radA	Streptococcus mitis NCTC 12261	88.962	100	0.89
radA	Streptococcus mitis SK321	88.962	100	0.89
radA	Bacillus subtilis subsp. subtilis str. 168	61.148	100	0.611