Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUK51_RS17765 Genome accession   NZ_CP094931
Coordinates   4146849..4148234 (-) Length   461 a.a.
NCBI ID   WP_045754754.1    Uniprot ID   -
Organism   Sphingobacterium faecium strain WB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4141849..4153234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK51_RS17750 (MUK51_17690) nagB 4142750..4144669 (-) 1920 WP_045754751.1 glucosamine-6-phosphate deaminase -
  MUK51_RS17755 (MUK51_17695) - 4144811..4145959 (-) 1149 WP_094771855.1 methionine aminotransferase -
  MUK51_RS17760 (MUK51_17700) - 4146097..4146777 (+) 681 WP_094771854.1 TlpA disulfide reductase family protein -
  MUK51_RS17765 (MUK51_17705) radA 4146849..4148234 (-) 1386 WP_045754754.1 DNA repair protein RadA Machinery gene
  MUK51_RS17770 (MUK51_17710) - 4148332..4148832 (+) 501 WP_260947634.1 sigma-70 family RNA polymerase sigma factor -
  MUK51_RS17775 (MUK51_17715) - 4148832..4149446 (+) 615 WP_260947635.1 hypothetical protein -
  MUK51_RS17780 (MUK51_17720) - 4149487..4149765 (+) 279 WP_094771852.1 DUF1294 domain-containing protein -
  MUK51_RS17785 (MUK51_17725) - 4149762..4150919 (-) 1158 WP_260947636.1 dipeptidase -
  MUK51_RS17790 (MUK51_17730) - 4150925..4152694 (-) 1770 WP_260947637.1 serine hydrolase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50320.72 Da        Isoelectric Point: 6.7502

>NTDB_id=674305 MUK51_RS17765 WP_045754754.1 4146849..4148234(-) (radA) [Sphingobacterium faecium strain WB1]
MAKTKSAYFCQSCGFESAKWLGQCPSCKQWNSLVEEVVEKSGSKVPEWRSTSVTSSPKRANKAAVIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSNANCYILTETSTQ
NIFKQIEVVQPDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVLIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDAPVSGVSIAAMLEGARPMMIEVQALVSN
SAFGNPQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDIAVKTNITFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGIFISKFNTKGLDPKKYNIAIRPVATLEDVFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=674305 MUK51_RS17765 WP_045754754.1 4146849..4148234(-) (radA) [Sphingobacterium faecium strain WB1]
ATGGCTAAAACAAAATCAGCATATTTCTGTCAAAGTTGTGGATTTGAATCTGCAAAATGGCTGGGACAATGTCCTTCATG
TAAACAATGGAATTCTTTAGTGGAGGAAGTTGTCGAGAAATCAGGTTCAAAAGTTCCAGAATGGCGGAGTACTTCGGTGA
CATCCTCACCTAAACGCGCAAATAAAGCTGCCGTTATCCACGAGATCGTGTATCAAGATGAATCCCGTATCTTAACACCT
GATCAGGAATTTAACCGTGTGCTTGGAGGAGGGATTGTTCCGGGGTCTTTGGTCTTGATCGGAGGGGAGCCCGGTATCGG
TAAATCGACTTTAATGTTGCAACTCGCGTTATCTATTCCACAGGTGAAGACCTTATATATTTCTGGAGAGGAAAGTGAGC
AACAGATCAAAATGCGGGCGGAACGGTTGTCACAATCATCAAATGCAAATTGCTATATCTTAACGGAAACTTCTACTCAG
AATATCTTTAAACAGATCGAGGTAGTACAGCCCGATGTGATTGTGATCGACTCCATTCAGACGCTACATTCTTCTCAAAT
TGAATCTGCCCCCGGGTCGGTATCTCAAGTGCGAGAATGTACTGCTGAGTTGCTGCGTTTTGCAAAAGAAACAAGTACGC
CTGTTTTGATTGTTGGTCATATTACTAAAGATGGTTCTATCGCAGGTCCCAAAGTATTGGAACATATGGTCGATACGGTA
TTGCAATTTGAAGGTGATCGACATCATGTATACCGGATTTTGCGAGCCGTGAAAAATCGTTTTGGTTCTGCCTCCGAACT
AGGGATATATGAAATGCAAGGATCGGGACTGCGAGAGGTTTCTAATCCTTCTGAAATCATGATTTCGCAACGAGATGCTC
CGGTTAGTGGGGTTTCTATTGCGGCCATGTTAGAGGGGGCACGTCCTATGATGATCGAAGTACAAGCATTGGTCAGTAAT
TCTGCATTTGGAAACCCACAGCGTACCTCTACTGGATTTGATACCAAAAGATTAAGTATGTTGCTTGCTGTACTGGAAAA
GCGCTTTGGCTTTAGGTTGAGCGCGCAAGACGTTTTCTTAAATATTGCTGGCGGATTGCGTGTGGAAGACCCTGCCATAG
ATTTGGCTGTGATCGTTGCTATTATTTCATCACAACAGGATATTGCTGTAAAAACGAATATCACATTTGCGGGAGAAGTG
GGGCTTTCAGGAGAAATTCGTGCCGTAAATCGCATCGAGCAACGCATTGCTGAGGCTGAGAAATTGGGATTTGAAGGTAT
TTTTATATCGAAGTTTAATACCAAAGGATTGGATCCTAAAAAGTATAATATCGCGATTCGACCTGTGGCAACATTAGAAG
ATGTATTTAGAGCCTTGTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.916

100

0.531
  radA Streptococcus mitis NCTC 12261

52.061

100

0.521
  radA Streptococcus pneumoniae Rx1

51.948

100

0.521
  radA Streptococcus pneumoniae TIGR4

51.948

100

0.521
  radA Streptococcus pneumoniae D39

51.948

100

0.521
  radA Streptococcus pneumoniae R6

51.948

100

0.521
  radA Streptococcus mitis SK321

51.844

100

0.518