Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG856_RS29810 Genome accession   NZ_CP109322
Coordinates   6484280..6486490 (+) Length   736 a.a.
NCBI ID   WP_406429814.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6479280..6491490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG856_RS29805 (OG856_29835) - 6482211..6484118 (-) 1908 WP_406467771.1 HSP90 family protein -
  OG856_RS29810 (OG856_29840) recG 6484280..6486490 (+) 2211 WP_406429814.1 ATP-dependent DNA helicase RecG Machinery gene
  OG856_RS29815 (OG856_29845) rsmD 6486681..6487265 (+) 585 WP_406467772.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG856_RS29820 (OG856_29850) coaD 6487292..6487771 (+) 480 WP_267007937.1 pantetheine-phosphate adenylyltransferase -
  OG856_RS29825 (OG856_29855) - 6487870..6488973 (+) 1104 WP_406467774.1 ATP synthase F0 subunit B -
  OG856_RS29830 (OG856_29860) - 6489121..6489789 (+) 669 WP_030978751.1 DUF177 domain-containing protein -
  OG856_RS29835 (OG856_29865) rpmF 6489792..6489965 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  OG856_RS29840 (OG856_29870) rnc 6489985..6490809 (+) 825 WP_406429817.1 ribonuclease III -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 80157.89 Da        Isoelectric Point: 6.1964

>NTDB_id=674205 OG856_RS29810 WP_406429814.1 6484280..6486490(+) (recG) [Streptomyces sp. NBC_01594]
MDRVSAFDEPLKKLLGGATAKVMAEHLDLHTVGDLLHHYPRRYEERGKLTALADLPLDEHVTVVAQVADARIMMFNNGRG
KRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKMQLAHPTYQLLDATDADEATEAVDAFAGRLLP
IYPACKQLDSWRIAKAVDTVLPSAREAVDPLPPSLREGRGFTPLPEALLKIHRPQTKADIADARDRLKWDEAFVLQVALA
RRRYADTQLPAVARIPAHGGLLDSFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTLVALRAMLAVVDA
GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDLGTKVVLLTGSMGMAARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDK
PHFLTRAWERVREEVENGHQAYVVCPRIGDDADEETEKKKGKKQPPEDDGDKRPPLAVLEIAEQLTKGALAGLRIAVLHG
RMNPDDKDDVMRRFAAGQVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEAHEASP
ARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVVVVAADPELTHLPELRTA
LDALLDKEREEYLDKG

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=674205 OG856_RS29810 WP_406429814.1 6484280..6486490(+) (recG) [Streptomyces sp. NBC_01594]
ATGGATCGCGTGTCTGCGTTCGACGAACCTCTCAAGAAGCTGCTCGGCGGTGCCACCGCGAAGGTGATGGCCGAACATCT
CGACCTGCACACGGTCGGTGATCTGCTGCACCACTACCCGCGGCGGTACGAGGAGCGCGGCAAGCTGACCGCGCTGGCCG
ACCTCCCGCTGGACGAGCATGTGACCGTCGTCGCCCAGGTCGCCGACGCCCGGATCATGATGTTCAACAACGGCAGGGGC
AAACGCCTGGAGGTTACCCTCACCGACGGCAGCGGCCGGCTCCAGCTGGTCTTCTTCGGCCACGGCGTGCACAAGCCGCA
CAAGGAACTGCTGCCCGGACGCCGGGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGGAAGATGCAGCTCGCCCACC
CCACCTACCAGCTGCTCGACGCCACGGACGCCGACGAGGCCACGGAGGCGGTGGACGCCTTCGCCGGGCGGCTGCTGCCC
ATCTATCCGGCCTGCAAACAGCTCGACTCCTGGCGGATCGCCAAGGCCGTCGACACCGTGCTGCCCAGCGCCCGGGAGGC
CGTCGACCCGCTGCCGCCGTCGCTGCGCGAGGGGCGTGGCTTCACCCCGCTGCCCGAGGCGCTGCTGAAGATCCACCGCC
CGCAGACCAAGGCGGACATCGCCGACGCCAGGGACCGGCTGAAATGGGACGAGGCGTTCGTCCTCCAGGTCGCGCTCGCC
CGCCGCCGGTACGCGGACACCCAGCTTCCGGCGGTGGCGCGGATCCCTGCCCACGGCGGACTGCTCGACAGCTTCGACGC
CAAGCTGCCGTTCACCCTCACCGAGGGCCAGGAGAAGGTCTCCAAGGAGATCTTCGACGACCTGGCGACCGAGCACCCGA
TGCACCGACTGCTGCAGGGCGAGGTCGGTTCCGGGAAGACGCTGGTCGCGCTGCGTGCCATGCTCGCCGTGGTCGACGCG
GGCGGACAGGCCGCGATGCTCGCCCCCACCGAGGTGCTGGCCCAGCAGCATCACCGGTCCATCACGGAAATGATGGGCGA
GCTGGCCGAGGGAGGGATGCTGGGCGGCTCCGACCTCGGTACGAAGGTGGTGCTGCTCACCGGCTCCATGGGGATGGCGG
CCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCATGCGCTGATCGAGGACAAG
GTGCAGTTCCACGACCTGGGGCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGCGACGCCCTGCGGTC
CAAGGGCAAGCAGCCGCCGCACCTGCTGGTCATGACCGCCACACCCATTCCCCGTACCGTCGCCATGACCGTCTTCGGTG
ACCTGGAGACGTCCGTCCTGGACCAGCTGCCGGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTCCCCGCCAAGGACAAG
CCGCACTTCCTCACCCGCGCCTGGGAGCGGGTCCGCGAGGAGGTCGAGAACGGCCATCAGGCGTACGTCGTATGTCCCCG
GATCGGTGACGACGCCGACGAGGAGACCGAGAAGAAGAAGGGCAAGAAGCAGCCGCCCGAGGACGACGGCGACAAGCGCC
CGCCGCTCGCCGTGCTGGAGATCGCCGAGCAGCTCACCAAGGGCGCCCTCGCCGGTCTGCGGATCGCGGTGCTGCACGGC
AGGATGAACCCCGACGACAAGGACGACGTGATGCGCCGCTTCGCCGCGGGCCAGGTCGACGTCCTCGTCGCGACGACCGT
CATCGAGGTCGGGGTGAACGTCCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGCTCC
ACCAGCTGCGCGGCCGCGTCGGCCGTGGCTCCGCCGCCGGCCTCTGCCTGCTGGTCAGCGAGGCGCACGAGGCGAGCCCC
GCCCGGGCCCGGCTGTCCGCCGTCGCCGCCACCCTCGACGGCTTCGAACTGTCCCGGATCGACCTCGAGCAGCGCCGCGA
GGGCGATGTCCTCGGCCAGGCCCAGTCAGGTGTCCGCTCCTCCCTGCGGATGCTCACCGTCATCGATGACGAGGAGGTCA
TCGCCGCCGCCCGCGAGGAGGCCGTGGTCGTCGTCGCCGCCGACCCGGAGCTGACACACCTGCCCGAGCTGCGCACCGCC
CTGGACGCACTGCTCGACAAGGAGCGCGAGGAGTACCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(651-713)

Helicase conserved C-terminal domain (Helicase_C)

(545-623)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)

DEAD/DEAH box helicase (DEAD)

(295-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

37.966

94.837

0.36