Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R48_RS06450 Genome accession   NZ_AP022298
Coordinates   1345848..1346585 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BEC1-S17-ESBL-09     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340848..1351585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R48_RS06420 (BE1S17E09_12570) yfiL 1341007..1341372 (-) 366 WP_077557435.1 DUF2799 domain-containing protein -
  H7R48_RS06425 (BE1S17E09_12580) aroF 1341581..1342651 (+) 1071 WP_001168050.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R48_RS06430 (BE1S17E09_12590) tyrA 1342662..1343783 (+) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R48_RS06435 (BE1S17E09_12600) pheA 1343826..1344986 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R48_RS06440 pheL 1345086..1345133 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R48_RS06445 (BE1S17E09_12610) raiA 1345237..1345578 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R48_RS06450 (BE1S17E09_12620) comL 1345848..1346585 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R48_RS06455 (BE1S17E09_12630) rluD 1346720..1347700 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R48_RS06460 (BE1S17E09_12640) yfiH 1347697..1348428 (+) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  H7R48_RS06465 (BE1S17E09_12650) clpC 1348558..1351131 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=67419 H7R48_RS06450 WP_000197686.1 1345848..1346585(-) (comL) [Escherichia coli strain BEC1-S17-ESBL-09]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=67419 H7R48_RS06450 WP_000197686.1 1345848..1346585(-) (comL) [Escherichia coli strain BEC1-S17-ESBL-09]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment