Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG846_RS09700 Genome accession   NZ_CP109314
Coordinates   2090463..2092391 (+) Length   642 a.a.
NCBI ID   WP_329010960.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01601     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2085463..2097391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG846_RS09685 (OG846_09695) - 2086743..2087051 (+) 309 WP_161145768.1 YtxH domain-containing protein -
  OG846_RS09690 (OG846_09700) - 2087148..2088602 (+) 1455 WP_329010956.1 FGGY family carbohydrate kinase -
  OG846_RS09695 (OG846_09705) rcrP 2088730..2090463 (+) 1734 WP_329010958.1 ABC transporter ATP-binding protein Regulator
  OG846_RS09700 (OG846_09710) rcrQ 2090463..2092391 (+) 1929 WP_329010960.1 ABC transporter ATP-binding protein Regulator
  OG846_RS09705 (OG846_09715) - 2092527..2093753 (-) 1227 WP_329010962.1 RNA polymerase sigma factor -
  OG846_RS09710 (OG846_09720) dnaG 2093848..2095752 (-) 1905 WP_329010964.1 DNA primase -
  OG846_RS09715 (OG846_09725) - 2095800..2097065 (-) 1266 WP_329010965.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69911.52 Da        Isoelectric Point: 6.7852

>NTDB_id=674012 OG846_RS09700 WP_329010960.1 2090463..2092391(+) (rcrQ) [Streptomyces sp. NBC_01601]
MAGPMGRMMAGGGPDQRSMDFKNSGKRLVAQFRPERVTIYGLLACVVVSVALNVIGPKILGKATDLVFAGIVGRKMPAGA
SKEQVLHSLRARGQGSVADMLRSTDFVPGQGIDFDAVGRVLLLALGVFLVAGLLMAVATRLVNRAVNRTMYRLREQVQSK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINAMLTIIGVLVMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGTLNAHIEEMYTGHTLVKVFGRQEQSAKQFAEQNDELYEAAFKAQFHSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGTRPAERRGRVELE
HVSFRYDPQKPLIEDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVTGGRILLDGVDVREMSRDDLRAGIGMVLQDT
WLFGGTIAENIAYGSSREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSEPVILVLDE
ATSSVDTRTEVLIQKAMAKLADGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=674012 OG846_RS09700 WP_329010960.1 2090463..2092391(+) (rcrQ) [Streptomyces sp. NBC_01601]
ATGGCCGGTCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGAACTCGGGCAAGCG
GCTGGTTGCCCAGTTCCGCCCCGAACGGGTCACCATCTACGGCCTGCTGGCCTGCGTGGTGGTCAGCGTGGCGCTGAACG
TGATCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGCATCGTCGGCCGGAAGATGCCCGCCGGGGCG
TCCAAGGAACAGGTGCTTCACTCGCTGCGCGCGCGGGGCCAGGGCTCGGTCGCGGACATGCTGCGCAGCACCGACTTCGT
GCCCGGTCAGGGCATCGACTTCGACGCGGTGGGCCGGGTGCTGCTGCTGGCGCTCGGTGTCTTCCTGGTCGCGGGTCTGC
TGATGGCGGTGGCGACCCGGCTGGTTAACCGGGCCGTGAACCGCACGATGTACCGGCTGCGCGAGCAGGTGCAGTCCAAG
CTGTCGCGGCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACGCGATGCTGACCATCATCGGTGTGCTGGTGATGATGT
TCTACGTCTCGTGGATCCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCCTTCGTGGTGGCGACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCACCCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGGCAGGAGCAGTCGGCCAAGCAGTTCGCCGAGCAGAACGACGAGCTGTACGAGGCCG
CCTTCAAGGCGCAGTTCCACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCC
GTCGTGGGTGGTCTGCGGGTGGCTTCGGGCTCGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGGCGGACCCGGTGCCGGGGACGCGTCCCGCCGAGCGGCGCGGCCGGGTGGAGCTGGAG
CACGTGTCGTTCCGGTACGACCCTCAGAAGCCGCTGATCGAGGATCTCTCGCTGAAGGTGGAGCCGGGCCAGACGGTGGC
CATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTGACGGGCGGCCGGA
TCCTGCTGGACGGGGTGGACGTCCGGGAGATGTCGCGCGACGACCTGCGGGCCGGGATCGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCTCCTCGCGCGAGGTAACCCGCGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACCG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCCGAGCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCGGTGGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCCGACGGCCGCACCTCGTT
CGTCATCGCCCACCGCCTCTCCACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGTTCCATCGTGGAACAGG
GCGCGCACACCGACCTGTTGGCGGCGGACGGGGCCTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.997

96.885

0.397