Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG846_RS09695 Genome accession   NZ_CP109314
Coordinates   2088730..2090463 (+) Length   577 a.a.
NCBI ID   WP_329010958.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01601     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083730..2095463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG846_RS09660 (OG846_09670) - 2083921..2084919 (+) 999 WP_329019633.1 helix-turn-helix domain-containing protein -
  OG846_RS09665 (OG846_09675) - 2084936..2085946 (-) 1011 WP_329010954.1 hypothetical protein -
  OG846_RS09685 (OG846_09695) - 2086743..2087051 (+) 309 WP_161145768.1 YtxH domain-containing protein -
  OG846_RS09690 (OG846_09700) - 2087148..2088602 (+) 1455 WP_329010956.1 FGGY family carbohydrate kinase -
  OG846_RS09695 (OG846_09705) rcrP 2088730..2090463 (+) 1734 WP_329010958.1 ABC transporter ATP-binding protein Regulator
  OG846_RS09700 (OG846_09710) rcrQ 2090463..2092391 (+) 1929 WP_329010960.1 ABC transporter ATP-binding protein Regulator
  OG846_RS09705 (OG846_09715) - 2092527..2093753 (-) 1227 WP_329010962.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62424.69 Da        Isoelectric Point: 6.1307

>NTDB_id=674011 OG846_RS09695 WP_329010958.1 2088730..2090463(+) (rcrP) [Streptomyces sp. NBC_01601]
MLIRLLRTCLRPYKKPIALLVVLQLLQTCATLYLPNLNAHIIDNGVVKGDTGYILTAGALMIGISLVQVVCNIGAVYYGA
RTASALGRDLRGAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGICVALIVRRLRPLFRSMQTRLDTVNRVLREQITGNRVIRAFVRDEYEHGRFGQANGELTEMQLATGRMLAL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PLAPVTELRGHGHLEIRGAGFRYPGAEEPVLRSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVDVR
EADPALLARTVGLVPQKPYLFAGTVGSNLRYGKPDATDDELWAALETAQAKEFVERLEGGLEAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETADATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=674011 OG846_RS09695 WP_329010958.1 2088730..2090463(+) (rcrP) [Streptomyces sp. NBC_01601]
GTGCTCATACGACTTCTGCGGACCTGTCTCAGGCCCTACAAGAAACCCATCGCCCTTCTGGTGGTGCTTCAGCTCCTCCA
GACCTGCGCCACGCTCTACCTGCCGAACCTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGACCGCCGGCGCCCTCATGATCGGCATCTCGCTGGTCCAGGTCGTCTGCAACATCGGCGCCGTGTACTACGGCGCC
CGCACCGCCTCCGCGCTCGGCCGGGACCTGCGCGGCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGCTGGG
CCACTTCGGCGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCCCTCGGGCTGGATGTGCCGCTCTCCGCCGTA
CTGGTCGCCGTCGTGCCGGTGCTGGGCATCTGCGTGGCGCTGATCGTGCGCCGGCTGCGGCCGCTCTTCCGGTCGATGCA
GACCCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGCACGGGCGGTTCGGGCAGGCCAACGGCGAGCTGACCGAGATGCAGCTCGCCACCGGCCGGATGCTGGCGCTG
ATGTTCCCGATGGTGATGACCGTGGTGAACGTGTCGTCCATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTGCTGGAGACCGAGTCCAGCGTCGTGCCG
CCGCTCGCCCCCGTCACCGAACTGCGCGGGCACGGGCATCTGGAGATCCGGGGCGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGCTCCATCGAGCTGGTGGCACGCCCTGGCGAGACCACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTGGGCCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTCCTGGTGGACGGCGTGGACGTCCGC
GAGGCCGACCCGGCCCTGCTGGCCCGCACCGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGGCAG
CAATCTGCGCTACGGCAAGCCGGACGCCACCGACGACGAGCTGTGGGCGGCGCTGGAGACGGCGCAGGCCAAGGAGTTCG
TGGAGCGTCTTGAGGGCGGTCTGGAGGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGTGGTCAGCGCCAGCGTCTG
GCCATCGCCCGCACCCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCGCTGCGTGCGGCGCTGGGCCGGGAGACCGCCGACGCCACGGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTGCTGGACGAGGGCCGGGTGGTGGGCTCCGGCCGCCACCACGAGCTGATGGCGGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.531

97.92

0.397