Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   MTP21_RS21330 Genome accession   NZ_CP094881
Coordinates   1493045..1494142 (+) Length   365 a.a.
NCBI ID   WP_243977766.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488045..1499142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS21300 - 1488180..1489163 (+) 984 WP_243977761.1 Gfo/Idh/MocA family oxidoreductase -
  MTP21_RS21305 - 1489255..1490592 (-) 1338 WP_243977764.1 MATE family efflux transporter -
  MTP21_RS21310 - 1490724..1491038 (-) 315 WP_020334143.1 DUF496 family protein -
  MTP21_RS21315 - 1491418..1491633 (+) 216 WP_024373000.1 hypothetical protein -
  MTP21_RS21320 - 1491791..1492435 (+) 645 WP_014233769.1 YceH family protein -
  MTP21_RS21325 - 1492435..1492749 (+) 315 WP_014233770.1 GIY-YIG nuclease family protein -
  MTP21_RS21330 luxP 1493045..1494142 (+) 1098 WP_243977766.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  MTP21_RS21335 luxQ 1494142..1496715 (+) 2574 WP_243977768.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  MTP21_RS21340 - 1496890..1497345 (+) 456 WP_014233773.1 MarR family transcriptional regulator -
  MTP21_RS21345 - 1497379..1498437 (+) 1059 WP_020334151.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41610.89 Da        Isoelectric Point: 5.0706

>NTDB_id=673915 MTP21_RS21330 WP_243977766.1 1493045..1494142(+) (luxP) [Vibrio natriegens strain WPAGA4]
MKKELIFSLVLVAGMAPAAHPSQVLNGYWEYQEFLNEFPEQKQLTNALAEAVREKPIPVTSDKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPQNTHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILDGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=673915 MTP21_RS21330 WP_243977766.1 1493045..1494142(+) (luxP) [Vibrio natriegens strain WPAGA4]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATGGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAATGAATTTCCAGAGCAAAAGCAACTAACCAATGCACTGGCTGAAGCTGTTAGAG
AAAAACCGATTCCGGTGACTAGCGATAAAAAGCGTGAACTGAAGATTTCAGTCGTTTACCCAGGGCAGCAAATCTCAGAT
TACTGGATCAGAAACATAGATGCTTTTGAAAAACGGTTAGATAAGCTAAATATTAACTATCAGCTCAATCAGGTTTTTAC
CCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTCTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGATTGGGATAAACATCAGCCGTTTCTTTATGTTGGTTTTGACCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCCCAAAACACTCACTACAGTGTGCTTTACTTTTCAGAAGGCTACATTAGTGATG
TAAGAGGGAATACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTTTGGACAAGTACCCTGATGTCGATTTTATTTATGCTTGCTCAACAGA
CGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGAGGCTCTG
CAGAGCTAGACGCCATTTTAGATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACTGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACTGTATATTCTGGTGACTATGAAGTCGTCACCACATCAGA
TTCTCCCGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641