Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG955_RS00225 Genome accession   NZ_CP109313
Coordinates   43659..43877 (-) Length   72 a.a.
NCBI ID   WP_406502340.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01602     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38659..48877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG955_RS00205 (OG955_00205) - 40047..40541 (+) 495 WP_406502336.1 hypothetical protein -
  OG955_RS00210 (OG955_00210) - 40596..41330 (-) 735 WP_406502337.1 DUF6308 family protein -
  OG955_RS00215 (OG955_00215) - 41398..42144 (+) 747 WP_406502338.1 vWA domain-containing protein -
  OG955_RS00220 (OG955_00220) - 42273..43505 (-) 1233 WP_406502339.1 VWA domain-containing protein -
  OG955_RS00225 (OG955_00225) dinR/lexA 43659..43877 (-) 219 WP_406502340.1 LexA family protein Regulator
  OG955_RS00230 (OG955_00230) - 43874..44119 (-) 246 WP_406502341.1 hypothetical protein -
  OG955_RS00235 (OG955_00235) - 44434..44607 (-) 174 WP_406502342.1 hypothetical protein -
  OG955_RS00240 (OG955_00240) - 44715..45296 (+) 582 WP_406502343.1 dihydrofolate reductase family protein -
  OG955_RS00245 (OG955_00245) - 45502..46965 (-) 1464 WP_406506564.1 UvrD-helicase domain-containing protein -
  OG955_RS00250 (OG955_00250) - 47204..48070 (-) 867 WP_406502344.1 DUF6083 domain-containing protein -
  OG955_RS00255 (OG955_00255) - 48227..48490 (-) 264 WP_406502345.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7803.91 Da        Isoelectric Point: 11.8716

>NTDB_id=673909 OG955_RS00225 WP_406502340.1 43659..43877(-) (dinR/lexA) [Streptomyces sp. NBC_01602]
MSAGRPTVRQEAVLRAIRDVIADTGDAPTVREIGQRVGLSSSGSVAYQLGRLEKLGLISRNGRHWRSCRLTG

Nucleotide


Download         Length: 219 bp        

>NTDB_id=673909 OG955_RS00225 WP_406502340.1 43659..43877(-) (dinR/lexA) [Streptomyces sp. NBC_01602]
GTGAGCGCGGGCCGTCCGACTGTCCGGCAGGAGGCGGTCCTGCGGGCGATCAGGGATGTCATTGCGGACACCGGGGATGC
CCCCACGGTCCGGGAGATCGGGCAGCGCGTCGGACTGTCCAGCTCGGGATCGGTCGCCTACCAGCTCGGCCGCCTGGAGA
AGCTCGGCCTGATCAGCCGCAACGGACGGCACTGGCGCTCCTGCCGACTCACCGGATAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(7-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.548

86.111

0.375