Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BTUAT1_RS11125 Genome accession   NZ_AP014928
Coordinates   2208485..2208820 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TUAT1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2203485..2213820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTUAT1_RS11110 (BTUAT1_22000) gcvT 2203961..2205058 (-) 1098 WP_041091751.1 glycine cleavage system aminomethyltransferase GcvT -
  BTUAT1_RS11115 (BTUAT1_22010) - 2205620..2207290 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  BTUAT1_RS11120 (BTUAT1_22020) - 2207305..2208102 (+) 798 WP_017367588.1 YqhG family protein -
  BTUAT1_RS19255 (BTUAT1_22030) - 2208287..2208451 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  BTUAT1_RS11125 (BTUAT1_22040) sinR 2208485..2208820 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  BTUAT1_RS11130 (BTUAT1_22050) tasA 2208888..2209688 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  BTUAT1_RS11135 (BTUAT1_22060) sipW 2209747..2210319 (-) 573 WP_041091749.1 signal peptidase I SipW -
  BTUAT1_RS11140 (BTUAT1_22070) tapA 2210369..2210896 (-) 528 WP_041091748.1 amyloid fiber anchoring/assembly protein TapA -
  BTUAT1_RS11145 (BTUAT1_22080) - 2211149..2211475 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  BTUAT1_RS11150 (BTUAT1_22090) - 2211510..2211704 (-) 195 WP_008342191.1 YqzE family protein -
  BTUAT1_RS11155 (BTUAT1_22100) - 2211765..2212148 (-) 384 WP_060832429.1 competence type IV pilus minor pilin ComGG -
  BTUAT1_RS11160 (BTUAT1_22110) comGF 2212145..2212642 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  BTUAT1_RS11165 (BTUAT1_22120) comGE 2212584..2212898 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  BTUAT1_RS11170 (BTUAT1_22130) comGD 2212882..2213328 (-) 447 WP_060832430.1 competence type IV pilus minor pilin ComGD -
  BTUAT1_RS11175 (BTUAT1_22140) comGC 2213321..2213614 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=67390 BTUAT1_RS11125 WP_017357978.1 2208485..2208820(+) (sinR) [Bacillus altitudinis strain TUAT1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=67390 BTUAT1_RS11125 WP_017357978.1 2208485..2208820(+) (sinR) [Bacillus altitudinis strain TUAT1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment