Detailed information NTG0673896

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MTP21_RS12025
• Genome accession: NZ_CP094880
• Coordinates: 2655007..2655993 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain WPAGA4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2650007..2660993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTP21_RS12010	recA	2650558..2651604 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
MTP21_RS12015	pncC	2651795..2652286 (-)	492	WP_065302876.1	nicotinamide-nucleotide amidase	-
MTP21_RS12020	mutS	2652371..2654932 (+)	2562	WP_239948344.1	DNA mismatch repair protein MutS	-
MTP21_RS12025	rpoS	2655007..2655993 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
MTP21_RS12030	-	2656074..2656997 (-)	924	WP_243974844.1	peptidoglycan DD-metalloendopeptidase family protein	-
MTP21_RS12035	-	2657011..2657637 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MTP21_RS12040	surE	2657637..2658383 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
MTP21_RS12045	truD	2658413..2659456 (-)	1044	WP_243974846.1	tRNA pseudouridine(13) synthase TruD	-
MTP21_RS12050	ispF	2659499..2659978 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MTP21_RS12055	ispD	2659992..2660699 (-)	708	WP_020333970.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MTP21_RS12060	ftsB	2660701..2660982 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=673896 MTP21_RS12025 WP_024372915.1 2655007..2655993(-) (rpoS) [Vibrio natriegens strain WPAGA4]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=673896 MTP21_RS12025 WP_024372915.1 2655007..2655993(-) (rpoS) [Vibrio natriegens strain WPAGA4]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGCTTAGCCCTTCTGGACCTTATTGAAGAAGGAAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCGGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGAGCGTTGATGAACCAAACTCGTACTATT
CGCCTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATCATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGACATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGCTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTCACTC
GTGAACGCGTTCGTCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAG
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857