Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MTP21_RS11895 Genome accession   NZ_CP094880
Coordinates   2632872..2633390 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens strain WPAGA4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2627872..2638390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS11870 rimM 2627954..2628502 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  MTP21_RS11875 rpsP 2628533..2628781 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  MTP21_RS11880 ffh 2628990..2630372 (-) 1383 WP_243974810.1 signal recognition particle protein -
  MTP21_RS11885 - 2630597..2631391 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  MTP21_RS11890 - 2631510..2632787 (+) 1278 WP_014232961.1 CNNM domain-containing protein -
  MTP21_RS11895 luxS 2632872..2633390 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  MTP21_RS11900 - 2633460..2634065 (-) 606 WP_014232963.1 hypothetical protein -
  MTP21_RS11905 gshA 2634090..2635658 (-) 1569 WP_243974812.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=673893 MTP21_RS11895 WP_014232962.1 2632872..2633390(-) (luxS) [Vibrio natriegens strain WPAGA4]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=673893 MTP21_RS11895 WP_014232962.1 2632872..2633390(-) (luxS) [Vibrio natriegens strain WPAGA4]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCGCCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGCACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTCGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAATTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86