Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MTP21_RS09830 Genome accession   NZ_CP094880
Coordinates   2171425..2172786 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166425..2177786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS09795 moaE 2166983..2167438 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  MTP21_RS09800 moaD 2167440..2167697 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  MTP21_RS09805 moaC 2167694..2168173 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  MTP21_RS09810 moaB 2168201..2168713 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  MTP21_RS09815 moaA 2168814..2169803 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  MTP21_RS09820 - 2170110..2171000 (+) 891 WP_118118975.1 YvcK family protein -
  MTP21_RS09825 luxU 2171084..2171428 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  MTP21_RS09830 luxO 2171425..2172786 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  MTP21_RS09835 uvrB 2173117..2175147 (-) 2031 WP_065299959.1 excinuclease ABC subunit UvrB -
  MTP21_RS09845 rsxA 2176133..2176711 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  MTP21_RS09850 rsxB 2176715..2177311 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=673887 MTP21_RS09830 WP_049794667.1 2171425..2172786(-) (luxO) [Vibrio natriegens strain WPAGA4]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=673887 MTP21_RS09830 WP_049794667.1 2171425..2172786(-) (luxO) [Vibrio natriegens strain WPAGA4]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGATATGA
CGGGTATGGACGTTCTTCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTAATTAAACCATGTGAAGCCGACCGCTTGCGTGTCAC
GGTGAACAACGCAATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGTGGTGACAAACCTTTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCTGCAGAATTAGCGGATGGCGGTACGCTTTTCCTCGATGAACTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGTTCATCAAAAATGAAAAGCGTGGATGT
ACGTTTTGTGTGTGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCGTACTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCTATTGAACGCGCAATTGAAGCGTGTGACGGTAATATTCCTCGAGCAGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859