Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB06_RS36360 Genome accession   NZ_CP109312
Coordinates   8032127..8032906 (-) Length   259 a.a.
NCBI ID   WP_266432931.1    Uniprot ID   A0ABP7SVC3
Organism   Streptomyces sp. NBC_01604     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8027127..8037906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS36350 (OHB06_36360) - 8028849..8029625 (+) 777 WP_406495886.1 GNAT family N-acetyltransferase -
  OHB06_RS36355 (OHB06_36365) - 8029980..8031974 (+) 1995 WP_406495888.1 ATP-dependent DNA helicase -
  OHB06_RS36360 (OHB06_36370) dinR/lexA 8032127..8032906 (-) 780 WP_266432931.1 transcriptional repressor LexA Regulator
  OHB06_RS36365 (OHB06_36375) nrdR 8033470..8034030 (+) 561 WP_266432929.1 transcriptional regulator NrdR -
  OHB06_RS36370 (OHB06_36380) - 8034195..8037089 (+) 2895 WP_345568957.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28039.75 Da        Isoelectric Point: 7.0666

>NTDB_id=673886 OHB06_RS36360 WP_266432931.1 8032127..8032906(-) (dinR/lexA) [Streptomyces sp. NBC_01604]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=673886 OHB06_RS36360 WP_266432931.1 8032127..8032906(-) (dinR/lexA) [Streptomyces sp. NBC_01604]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCTCCGGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACCGGCAGCGGCGGGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAAGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCTCATCAGCTGATGGCCCTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCCTACGAAGTGCGCGGATCCGACCAGGCATCATCGGCGCAGCCCACCGACACCGCAGGCA
AGCCGGCCGCGTCGTACGTCCCGCTGGTCGGCCGCATCGCCGCAGGTGGCCCGATCCTCGCGGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTGGTCGGCGACGGTGAGTTGTTCGTCCTCAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCGATCTGCGACGGAGACTGGGTCACGGTCCGCCGTCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGCGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCCGCCTACGAGCCG
ATTCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375